| Literature DB >> 31720385 |
Josephine W Mburu1,2, Leonard Kingwara1, Magiri Ester2, Nyerere Andrew2.
Abstract
BACKGROUND: Rifampin-based therapy potentially exacerbates glycemic control among TB patients who are already at high risk of hyperglycemia. This impacts negatively to the optimal care of TB- diabetes mellitus co-affected patients. Classification and regression tree (CART), a machine-learning algorithm impervious to statistical assumptions is one of the ideal tools for clinical decision-making that can be used to identify hemoglobin A1C (HbA1C) cut-off thresholds predictive of poor TB treatment outcomes in such populations.Entities:
Keywords: Fractal geometry; Hollow fiber; Hyperglycemia; Tuberculosis outcomes
Year: 2018 PMID: 31720385 PMCID: PMC6830151 DOI: 10.1016/j.jctube.2018.01.002
Source DB: PubMed Journal: J Clin Tuberc Other Mycobact Dis ISSN: 2405-5794
Difference in demographic and clinical characteristics in patients with/out clinical outcomes ascertained.
| Variable | Level | All patients n = 340 (%) | Outcomes Unknown n = 19 (n) | Outcomes Ascertained n = 321 (n) | p-value |
|---|---|---|---|---|---|
| Demographic | Characteristics | ||||
| County | Kiambu | 56 (17) | 4 (21) | 52 (16) | 0.584 |
| Nairobi | 283 (83) | 268 (79) | 268 (83) | ||
| Missing data | 1 () | 1 (1) | |||
| Gender | Female | 96 (28) | 5 (26) | 91 (28) | 0.848 |
| Male | 244 (72) | 14 (74) | 230 (72) | ||
| Cigarettes | Ever-smoker | 97 (29) | 1 (5) | 96 (30) | 0.021 |
| Age (years) | Mean (SD) | 32.11 (8.80) | 29 (5.16) | 32.29 (8.94) | 0.172 |
| Clinical | Characteristics | ||||
| HIV test | Negative | 238 (70) | 11 (58) | 227 (71) | 0.312 |
| Positive | 77 (23) | 7 (37) | 70 (22) | ||
| Not Done | 25 (7) | 1 (5) | 24 (7) | ||
| BMI (kg/m2) | Mean (SD) | 19.55 (3.91) | 17.96 (2.35) | 19.65 (3.97) | 0.055 |
| Underweight | <18.5 | 133 (39) | 11 (58) | 122 (38) | 0.156 |
| Ideal | 18.5–25 | 184 (54) | 8 (42) | 176 (55) | |
| Overweight | >25 | 23 (7) | 0 | 23 (7) | |
| Weight (KG) | Mean (SD) | 56 (61) | 49.93 (5.61) | 54.88 (10.46) | 0.023 |
| Blood glucose (mmol/dL) | Mean (SD) | 3.61 (1.19) | 3.66 (0.69) | 3.60 (1.22) | 0.548 |
| Glycosylated hemoglobin (%) | Mean (SD) | 5.75 (2.22) | 6.27 (2.09) | 5.72 (2.23) | 0.145 |
| Creatinine (mmol/dL) | Mean (SD) | 89.39 (20.33) | 83.79 (22.78) | 89.72 (20.17) | 0.087 |
| BUN (mmol/dL) | Mean (SD) | 3.76 (1.16) | 3.51 (1.09) | 3.78 (1.17) | 0.378 |
| Treatment | Regimen | ||||
| Regimen I | 2HRZE/4HR | 308 (91) | 14 (74) | 294 (92) | 0.009 |
| Regimen II (retreatment) | 2HRZES/1HRZE/5HRE | 32 (9) | 5 (26) | 27 (8) |
There is no significance difference in demographic and clinical characteristics between patients whose outcomes were ascertained compared with those with an unknown outcome with exception to weight, smoking and regimen I TB therapy.
Fig. 1Distribution of HbA1C, blood glucose and weight across clinical outcomes.
There was no correlation between blood glucose and HbA1C levels at baseline: Spearman's rho = 0.035, p = 0.515. None of the enrolled patients reported a history or received prior treatment for DM. Weight had a borderline significance for transfers (Fig. 1 G). In general patients who weigh less had unfavorable clinical outcomes compared to their heavier counterpart at p = 0.011(Fig. 1H). Cumulative probability for favorable outcomes or microbiologic cure decreased with increase in HbA1C: and, the nonlinear trends are even more apparent before the 6.5% HbA1C thresholds are reached as indicated in Fig. 1C (as indicated by the arrows in).
Ranking of most important variables predictive of clinical outcomes based on boosted classification and regression models.
| Model I | Model II | ||
|---|---|---|---|
| N = 340 | N = 321 | ||
| Favorable n = 308 (91%) | Favorable n = 308 (96%) | ||
| Unfavorable n | Microbiologic failure n = 13 (4%) | ||
| Ranked Variable | Relative | Ranked Variable | Relative |
| Score | Score | ||
| 1. HBA1C | 100 | 1. HBA1C | 100.00 |
| 2. Regimen | 79.38 | 2. Regimen | 72.61 |
| 3. Creatinine | 70.09 | 3. Age | 69.19 |
| 4. Body mass index | 63.93 | 4. Weight | 55.39 |
| 5. Blood urea nitrogen | 62.47 | 5. Random blood glucose | 49.87 |
| 6. Weight | 62.63 | 6. Body mass index | 48.74 |
| 7. Age | 61.63 | 7. BUN | 48.18 |
| 8. Random blood glucose | 55.62 | 8. HIV positive results | 46.51 |
| 9. HIV positive result | 39.21 | 9. Ever smoker | 39.69 |
| 10. Male gender | 34.48 | 10. Creatinine | 37.69 |
| Model properties | ROClearn = 0.96 ± 0.01 | Model properties | ROClearn = 0.97 ± 0.01 |
| ROCtest = 0.65 ± 0.06 | ROCtest = 0.56 ± 0.07 | ||
The ROC score for each train sample was >0.95 and misclassification rates <0.02 indicating that the model described the data well. On the other hand, ROC scores on test samples after cross validation was >0.65 for each of the model examined which is reassuring in prediction on future similar sample. We depict the pruned back optimal tree for the favorable versus microbiologic failure outcome that examined 321 patients in Fig. 3.
Figure 3Classification and Regression Tree (CART), U shaped curve and cut-off.
Simulation on how to interpret the classification tree is by tracking the 13 patients who failed therapy. Ten (77%) out of 13 patients who experienced microbiologic failure had HbA1C >4.55% while 8 (62%) of these had weight <53.25 kg. The three HbA1C cut-off levels depicting U-shaped pattern that interacted with both weight and BMI were identified by CART. When the model was applied to the entire cohort it revealed that 8/11 (73%) of patients with HbA1C <2.95%, 111/114 (97%) with HbA1C between 2.95% and 4.55% and 189/215 (88%) of patients with HbA1c >4.55% experienced microbiologic failure.
Glycosylated hemoglobin A1C thresholds levels predictive clinical outcomes in patients treated for pulmonary Mycobacterium tuberculosis.
| Variable | Total | HbA1c (%) | p-value | ||
|---|---|---|---|---|---|
| N = 340 (%) | levels | ||||
| Clinical Outcomes | 2.95–4.55 | <2.95 | >4.55 | ||
| n = 114 (%) | n = 11 (%) | n = 215 | |||
| At end of treatment | |||||
| Microbiologic failure | 13 (4) | 0 | 3 (27) | 10 (5) | <0.001 |
| Microbiologic cure | 285 (84) | 102 (89) | 6 (55) | 177 (82) | |
| Treatment complete | 23 (7) | 9 (8) | 2 (18) | 12 (6) | |
| Unknown (TO/OOC) | 19 (6) | 3 (3) | 0 | 16 (7) | |
| Favorable outcome | 308 (91) | 111 (97) | 8 (73) | 189 (88) | 0.002 |
| Unfavorable outcome | 32 (9) | 3 (3) | 3 (27) | 26 (12) | |
| Modifiable factors | |||||
| Weight (mean [SD]) KG | 54.61 (10.32) | 53.64 (9.29) | 50.82 (9.82) | 55.32 (10.80) | 0.173 |
| BMI (mean [SD]) | 19.55 (3.91) | 19.35 (4.24) | 18.36 (3.34) | 19.72 (3.75) | 0.417 |
| KG/m2 | |||||
| Blood glucose (mean [SD]) mmol/L | 3.61 (1.19) | 3.52 (0.95) | 3.22 (0.63) | 3.67 (1.32) | 0.301 |
| Regimen I (2HRZE) | 308 (91) | 99 (87) | 10 (91) | 199 (93) | 0.24 |
| Regimen II (2SHRZE/1HRZE/5HRE) | 32 (9) | 15 (13) | 1 (9 | 16 (7) | |
| Other factors | |||||
| Female | 96 (28) | 30 (26) | 3 (27) | 63 (29) | 0.847 |
| Male | 244 (72) | 84 (74) | 8 (73) | 152 (71) | |
| HIV test –positive | 77 (23) | 26 (23) | 4 (36) | 47 (22) | 0.518 |
| -negative | 238 (70) | 82 (72) | 7 (64) | 149 (69) | |
| -not done | 25 (7) | 6 (5) | 0 | 19 (9) | |
Table 3 above confirms that these HbA1c thresholds were also statistically significant for outcomes observed at end of treatment based. The other known risk factors for either tuberculosis or diabetes mellitus were not associated with these thresholds.
Multivariate logistic regression analyses of associations between favorable outcome at end of therapy and glycosylated hemoglobin A1C (HbA1C) levels and weight at baseline.
| Variable | Level | Odds ratio (95% CI) | p-value |
|---|---|---|---|
| HbAIC (%) | 2.95%−4.55% | Referent | |
| <2.95% | 0.06 (0.01–0.39) | 0.003 | |
| >4.55% | 0.18 (0.05–0.61) | 0.006 | |
| Weight (Kg) | >53.25 | Referent | |
| <53.25 | 0.36 (0.16–0.76) | 0.009 | |
| Constant | 24.93 (7.74–80.30) | <0.001 |