| Literature DB >> 31718694 |
Yan Chen1,2, Zhonghu Li3, Mengyun Zhang4, Bo Wang3, Jiaxin Ye3, Yang Zhang3, Di Tang3, Dandan Ma3, Weidong Jin3, Xiaowu Li1,5, Shuguang Wang6.
Abstract
BACKGROUND: Circular RNAs (circRNAs) have recently been shown to play important roles in different tumors. However, their detailed roles and regulatory mechanisms in pancreatic ductal adenocarcinoma (PDAC) are not well understood. This study aimed to identify enriched circRNAs and detect their functions and mechanisms in PDAC cells and tissues.Entities:
Keywords: Circular RNA; Metastasis; Notch1; Pancreatic ductal adenocarcinoma; Prognosis; Tumor progression; miR-34a
Mesh:
Substances:
Year: 2019 PMID: 31718694 PMCID: PMC6852927 DOI: 10.1186/s13046-019-1436-0
Source DB: PubMed Journal: J Exp Clin Cancer Res ISSN: 0392-9078
Clinical characteristics and expressions of circ-ASH2L in 90 pancreatic carcinoma patients
| All cases | circ-ASH2L | |||
|---|---|---|---|---|
| High | Low | χ2 | ||
| 45 | 45 | |||
| Gender | 0.257 | 0.800 | ||
| Male | 34 | 36 | ||
| Female | 11 | 9 | ||
| Age, years | 0.045 | 1.000 | ||
| ≤ 60 | 24 | 25 | ||
| > 60 | 21 | 20 | ||
| Tumor location | 0.278 | 0.793 | ||
| Head | 35 | 37 | ||
| Body or tail | 10 | 8 | ||
| Tumor size, cm | 0.200 | 0.823 | ||
| ≤ 2 | 29 | 31 | ||
| > 2 | 16 | 14 | ||
| Neural invasion | 0.000 | 1.000 | ||
| Yes | 18 | 18 | ||
| No | 27 | 27 | ||
| Duodenal invasion | 0.385 | 0.758 | ||
| Yes | 7 | 5 | ||
| No | 38 | 40 | ||
| Differentiation | 3.090 | 0.213 | ||
| Low | 12 | 8 | ||
| Median | 30 | 29 | ||
| High | 3 | 8 | ||
| Lymphatic invasion | 5.954 | |||
| Yes | 21 | 10 | ||
| No | 24 | 35 | ||
| Vascular invasion | 2.862 | 0.091 | ||
| Yes | 15 | 8 | ||
| No | 30 | 37 | ||
| Liver metastasis | 3.462 | 0.063 | ||
| Yes | 9 | 3 | ||
| No | 36 | 42 | ||
| T factor | 3.629 | 0.057 | ||
| T1,2 | 20 | 29 | ||
| T3,4 | 25 | 16 | ||
| TNM | 7.647 | |||
| I or IIA | 19 | 32 | ||
| IIB or III, IV | 26 | 13 | ||
#The median expression level of each circ-RNA was used as the cut-off value. The correlation analysis was tested by chi-square tests. The bold values indicate P-values less than 0.05
Fig. 1a Relative circ-ASH2L expressions of Hs 766 T and Hs 766 T-L2 were measured by qRT-PCR. b Relative circ-ASH2L expressions of HPDE (the normal pancreatic cell line) and the indicated PDAC cells were measured by qRT-PCR. c Relative circ-ASH2L expressions of HPDE (the normal pancreatic cell line) and the indicated PDAC cells were measured by qRT-PCR. d qRT-PCR analysis of circ-ASH2L or β-actin after treatment of RNase R in Capan-1 and Aspc-1 cells. e qRT-PCR analysis of circ-ASH2L and β-actin after treatment of Actinomycin D at the indicated time points in Capan-1 cells. f qRT-PCR analysis of circ-ASH2L and β-actin after treatment of Actinomycin D at the indicated time points in Aspc-1 cells. g Relative expressions of circ-ASH2L in indicate treated Capan-1 and Aspc-1 cells was measured by qRT-PCR. h The PCR products of Capan-1 cells were confirmed by Sanger sequencing to show the back-splice junction. i Schematic outlining the details of circ-ASH2L and its primer-designing details
Fig. 2a-b The migration abilities of indicate treated Aspc-1 (a) and Capan-1 cells (b) were measured by wound-healing assays. Scale bars = 50 μm. c-d The invasion abilities of indicate treated Aspc-1 (c) and Capan-1 cells (d) were measured by transwell assays. Scale bars = 50 μm. e-f The proliferation abilities of indicate treated Aspc-1 (e) and Capan-1 cells (f) were measured by EdU assays. Scale bars = 50 μm. g-h The proliferation abilities of indicate treated Aspc-1 (g) and Capan-1 cells (h) were measured by CCK-8 assays daily for 3 days. i-j The indicate treated Aspc-1 (i) and Capan-1cells (j) were stained by propidium iodide and analyzed using flow cytometry. k-l. The in vitro angiogenesis abilities of indicated treated Aspc-1 (k) and Capan-1 cells (l) were measured by tube-formation assays of HUVECS cells. Scale bars = 50 μm
Fig. 3a-b The in-situ expressions of circ-ASH2L (a) and 18S (b, as a control) in Capan-1 cells. Scale bars = 12.5 μm. c The expressions of indicated miRNAs in indicate treated HEK-293 cells were measured by qRT-PCR. d The prediction for miR-34a binding sites on circ-ASH2L transcript. e Schematic outlining the wild type and mut circ-ASH2L luciferase plasmid. (f) Luciferase activity in HEK-293 cells co-transfected with indicated concentration of miR-34a or circ-ASH2L luciferase reporter transcript. Data are showed as the ratio of firefly activity to Renilla luciferase activity. g RNA immunoprecipitation (RIP) experiments were performed using the anti-Ago2 or lgG antibody to immunoprecipitates, the expressions of circ-ASH2L or β-actin were measured by qRT-PCR. h The schematic diagram of RNA pull-down assay in this study. i circ-ASH2L was pulled down and enriched with miR-34a probe and then detected by qRT-PCR
Fig. 4a-b The invasion abilities of indicate treated Capan-1 (a) and Aspc-1 cells (b) were measured by transwell assays. Scale bars = 50 μm. c-d The proliferation abilities of indicate treated Capan-1 (c) and Aspc-1 cells (d) were measured by EdU assays. Scale bars = 50 μm. e-g The indicate treated Aspc-1 and Capan-1 cells (e) were stained by propidium iodide and analyzed using flow cytometry, the statistical results of Aspc-1 (f) and Capan-1 (g) cells were showed in right column. h-i The in vitro angiogenesis abilities of indicated treated Capan-1 and Aspc-1 cells were measured by tube-formation assays of HUVECS cells (h), and the statistical result was showed in right column (i)
Fig. 5a-b The protein expression levels of indicate treated Capan-1 (a) and Aspc-1 (b) cells were measured by WB analysis. c The mRNA expression levels of indicate treated Capan-1and Aspc-1 cells were measured by qRT-PCR analysis. d The protein expression levels of indicate treated Capan-1 and Aspc-1 cells were measured by ELISA analysis. e-g Animal experiments, the luciferase intensities were measured each week (e and f) after intrapancreatic injection with NC or circ-ASH2L overexpressing Capan-1 cells, pancreatic tumor in situ (the black arrows point to) and liver metastasis foci (the yellow arrows point to) were showed by autopsy and H&E staining (g)
Fig. 6a The relative expression levels of circ-ASH2Lwere analyzed in 25 pairs of PDAC tumor tissues and adjacent normal tissues. b The correlation analysis of circ-ASH2L and Notch1 in 50 tumor tissues of PDAC patients. c The correlation analysis of circ-ASH2L and miR-34a in 50 tumor tissues of PDAC patients. d-f K-M survival curves for the overall survival of 85 PDAC patients according to the relative expression of circ-ASH2L (d), miR-34a (e) or indicate combined circ-ASH2L and miR-34a (f), the median expression level of each gene was used as the cut-off value to define the High or Low expression
Univariate and multivariate survival analyses of the prognostic factors associated with survival in pancreatic carcinoma patients (n = 85)
| OS | Univariate analysis | Multivariate analyses | ||||
|---|---|---|---|---|---|---|
| Patients, n | Median survial time | HR | 95% CI | |||
| Gender | 0.153 | |||||
| Male/Female | 67/18 | 15/12 | ||||
| Age | 0.4 | |||||
| ≤ 60/> 60 | 38/47 | 14/13 | ||||
| Tumor location | 0.771 | |||||
| head/body or tail | 67/18 | 14/12 | ||||
| Tumor size | 0.165 | |||||
| ≤ 2/> 2 | 57/28 | 13/16 | ||||
| Neural invasion | 0.345 | |||||
| Yes/No | 33/52 | 14/14 | ||||
| Duodenal invasion | 2.535 | 1.316–4.884 | 0.005 | |||
| Yes/No | 12/73 | 10/16 | ||||
| Differentiation | 0.585 | |||||
| Low/Median/High | 19/57/9 | 14/14/18 | ||||
| Lymphatic invasion | 0.184 | |||||
| Yes/No | 31/54 | 11/16 | ||||
| Vascular invasion | 0.187 | |||||
| Yes/No | 21/64 | 13/16 | ||||
| TNM, | 0.284 | |||||
| I, IIA/ IIB, III or IV | 39/46 | 11/16 | ||||
| circ-ASH2L | 1.741 | 1.075–2.821 | ||||
| High/Low | 42/43 | 12/16 | ||||
# Forward LR method was applied during the multivariate cox regression analysis. The bold values indicate P-values less than 0.05
Fig. 7A schematic model of circ-ASH2L functions during tumor invasion
| RNAs | Sequence | Sequence | |
|---|---|---|---|
| circ-ASH2L | F: AACCAAGTTCCACCAGTCCA | R: CGGTATCTGGTGGCATCTCA | |
| β-actin | F: GCGGACTATGACTTAGTTGCGTTACA | R: TGCTGTCACCTTCACCGTTCCA | |
| P21 | F: GTCCAGCGACCTTCCTCATCCA | R: CCATAGCCTCTACTGCCACCATCT | |
| c-Met | F: GTCGCTCCGTATCCTTCTCTGTTG | R: GCCTCTGGTTCTGATGCTCTGTC | |
| SNAIL | F: GGCTCCTTCGTCCTTCTCCTCTAC | R: GTGGCTTCGGATGTGCATCTTGA | |
| Notch1 | F: TGCGAGACCAACATCAACGAGTG | R: TCAGGCAGAAGCAGAGGTAGGC | |
| U6 | F: CTCGCTTCGGCAGCACA | R: AACGCTTCACGAATTTGCGT | |
| miR-34a | GGTGGCAGTGTCTTAGCTGG | miR-128a | CCCTCACAGTGAACCGGTC |
| miR-605-5p | GGTAAATCCCATGGTGCCTTC | miR-885-3p | AGGCAGCGGGGTGTAGT |
| miR-142-3p | GGGTGTAGTGTTTCCTACTTTATGG | ||