Literature DB >> 32566943

Genomics at cellular resolution: insights into cognitive disorders and their evolution.

Stefano Berto, Yuxiang Liu, Genevieve Konopka.   

Abstract

High-throughput genomic sequencing approaches have held the promise of understanding and ultimately leading to treatments for cognitive disorders such as autism spectrum disorders, schizophrenia and Alzheimer's disease. Although significant progress has been made into identifying genetic variants associated with these diseases, these studies have also uncovered that these disorders are mostly genetically complex and thus challenging to model in non-human systems. Improvements in such models might benefit from understanding the evolution of the human genome and how such modifications have affected brain development and function. The intersection of genome-wide variant information with cell-type-specific expression and epigenetic information will further assist in resolving the contribution of particular cell types in evolution or disease. For example, the role of non-neuronal cells in brain evolution and cognitive disorders has gone mostly underappreciated until the recent availability of single-cell transcriptomic approaches. In this review, we discuss recent studies that carry out cell-type-specific assessments of gene expression in brain tissue across primates and between healthy and disease populations. The emerging results from these studies are beginning to elucidate how specific cell types in the evolved human brain are contributing to cognitive disorders.
© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Year:  2020        PMID: 32566943      PMCID: PMC7530518          DOI: 10.1093/hmg/ddaa117

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  141 in total

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-04-29       Impact factor: 6.237

Review 2.  Oligodendrocytes: Myelination and Axonal Support.

Authors:  Mikael Simons; Klaus-Armin Nave
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-06-22       Impact factor: 10.005

3.  Reduced signal for polygenic adaptation of height in UK Biobank.

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Journal:  Elife       Date:  2019-03-21       Impact factor: 8.140

4.  Neuronal nuclei isolation from human postmortem brain tissue.

Authors:  Anouch Matevossian; Schahram Akbarian
Journal:  J Vis Exp       Date:  2008-10-01       Impact factor: 1.355

5.  Shared and distinct transcriptomic cell types across neocortical areas.

Authors:  Bosiljka Tasic; Zizhen Yao; Lucas T Graybuck; Kimberly A Smith; Thuc Nghi Nguyen; Darren Bertagnolli; Jeff Goldy; Emma Garren; Michael N Economo; Sarada Viswanathan; Osnat Penn; Trygve Bakken; Vilas Menon; Jeremy Miller; Olivia Fong; Karla E Hirokawa; Kanan Lathia; Christine Rimorin; Michael Tieu; Rachael Larsen; Tamara Casper; Eliza Barkan; Matthew Kroll; Sheana Parry; Nadiya V Shapovalova; Daniel Hirschstein; Julie Pendergraft; Heather A Sullivan; Tae Kyung Kim; Aaron Szafer; Nick Dee; Peter Groblewski; Ian Wickersham; Ali Cetin; Julie A Harris; Boaz P Levi; Susan M Sunkin; Linda Madisen; Tanya L Daigle; Loren Looger; Amy Bernard; John Phillips; Ed Lein; Michael Hawrylycz; Karel Svoboda; Allan R Jones; Christof Koch; Hongkui Zeng
Journal:  Nature       Date:  2018-10-31       Impact factor: 49.962

6.  Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Authors:  Sabina Kanton; Michael James Boyle; Zhisong He; Malgorzata Santel; Anne Weigert; Fátima Sanchís-Calleja; Patricia Guijarro; Leila Sidow; Jonas Simon Fleck; Dingding Han; Zhengzong Qian; Michael Heide; Wieland B Huttner; Philipp Khaitovich; Svante Pääbo; Barbara Treutlein; J Gray Camp
Journal:  Nature       Date:  2019-10-16       Impact factor: 49.962

7.  Genetic controls balancing excitatory and inhibitory synaptogenesis in neurodevelopmental disorder models.

Authors:  Cheryl L Gatto; Kendal Broadie
Journal:  Front Synaptic Neurosci       Date:  2010-06-07

8.  Reproductive fitness and genetic risk of psychiatric disorders in the general population.

Authors:  Niamh Mullins; Andrés Ingason; Heather Porter; Jack Euesden; Alexandra Gillett; Sigurgeir Ólafsson; Daniel F Gudbjartsson; Cathryn M Lewis; Engilbert Sigurdsson; Evald Saemundsen; Ólafur Ó Gudmundsson; Michael L Frigge; Augustine Kong; Agnar Helgason; G Bragi Walters; Omar Gustafsson; Hreinn Stefansson; Kari Stefansson
Journal:  Nat Commun       Date:  2017-06-13       Impact factor: 14.919

9.  Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.

Authors:  J Gray Camp; Farhath Badsha; Marta Florio; Sabina Kanton; Tobias Gerber; Michaela Wilsch-Bräuninger; Eric Lewitus; Alex Sykes; Wulf Hevers; Madeline Lancaster; Juergen A Knoblich; Robert Lachmann; Svante Pääbo; Wieland B Huttner; Barbara Treutlein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-07       Impact factor: 11.205

10.  Conserved cell types with divergent features in human versus mouse cortex.

Authors:  Rebecca D Hodge; Trygve E Bakken; Jeremy A Miller; Kimberly A Smith; Eliza R Barkan; Lucas T Graybuck; Jennie L Close; Brian Long; Nelson Johansen; Osnat Penn; Zizhen Yao; Jeroen Eggermont; Thomas Höllt; Boaz P Levi; Soraya I Shehata; Brian Aevermann; Allison Beller; Darren Bertagnolli; Krissy Brouner; Tamara Casper; Charles Cobbs; Rachel Dalley; Nick Dee; Song-Lin Ding; Richard G Ellenbogen; Olivia Fong; Emma Garren; Jeff Goldy; Ryder P Gwinn; Daniel Hirschstein; C Dirk Keene; Mohamed Keshk; Andrew L Ko; Kanan Lathia; Ahmed Mahfouz; Zoe Maltzer; Medea McGraw; Thuc Nghi Nguyen; Julie Nyhus; Jeffrey G Ojemann; Aaron Oldre; Sheana Parry; Shannon Reynolds; Christine Rimorin; Nadiya V Shapovalova; Saroja Somasundaram; Aaron Szafer; Elliot R Thomsen; Michael Tieu; Gerald Quon; Richard H Scheuermann; Rafael Yuste; Susan M Sunkin; Boudewijn Lelieveldt; David Feng; Lydia Ng; Amy Bernard; Michael Hawrylycz; John W Phillips; Bosiljka Tasic; Hongkui Zeng; Allan R Jones; Christof Koch; Ed S Lein
Journal:  Nature       Date:  2019-08-21       Impact factor: 49.962

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  2 in total

1.  RET compound inheritance in Chinese patients with Hirschsprung disease: lack of penetrance from insufficient gene dysfunction.

Authors:  Qian Jiang; Yang Wang; Yang Gao; Hui Wang; Zhen Zhang; Qi Li; Shuhua Xu; Wei Cai; Long Li
Journal:  Hum Genet       Date:  2021-01-12       Impact factor: 4.132

2.  Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing.

Authors:  David Brown; Michael Altermatt; Tatyana Dobreva; Sisi Chen; Alexander Wang; Matt Thomson; Viviana Gradinaru
Journal:  Front Immunol       Date:  2021-10-21       Impact factor: 7.561

  2 in total

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