Literature DB >> 31712217

A Standard Numbering Scheme for Class C β-Lactamases.

Andrew R Mack1,2, Melissa D Barnes3,2, Magdalena A Taracila3,2, Andrea M Hujer3,2, Kristine M Hujer3,2, Gabriel Cabot4,5, Michael Feldgarden6, Daniel H Haft6, William Klimke6, Focco van den Akker7, Alejandro J Vila8,9,10,11, Andrea Smania12,13, Shozeb Haider14, Krisztina M Papp-Wallace3,7,15,2, Patricia A Bradford16, Gian Maria Rossolini17,18, Jean-Denis Docquier19, Jean-Marie Frère20, Moreno Galleni20, Nancy D Hanson21, Antonio Oliver4,5, Patrick Plésiat22,23,24, Laurent Poirel25,26, Patrice Nordmann25,26, Timothy G Palzkill27,28, George A Jacoby29, Karen Bush30, Robert A Bonomo31,3,32,7,15,2,8,33.   

Abstract

Unlike for classes A and B, a standardized amino acid numbering scheme has not been proposed for the class C (AmpC) β-lactamases, which complicates communication in the field. Here, we propose a scheme developed through a collaborative approach that considers both sequence and structure, preserves traditional numbering of catalytically important residues (Ser64, Lys67, Tyr150, and Lys315), is adaptable to new variants or enzymes yet to be discovered and includes a variation for genetic and epidemiological applications.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  AmpC; amino acid numbering; beta-lactamases; class C beta-lactamase; conserved residue; nomenclature; structure-activity relationships

Mesh：

Substances：

Year:  2020        PMID： 31712217      PMCID： PMC7038296          DOI： 10.1128/AAC.01841-19

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN： 0066-4804            Impact factor:   5.191


  17 in total

1.  Standard numbering scheme for class B beta-lactamases.

Authors:  M Galleni; J Lamotte-Brasseur; G M Rossolini; J Spencer; O Dideberg; J M Frère
Journal:  Antimicrob Agents Chemother       Date:  2001-03       Impact factor: 5.191

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  A standard numbering scheme for the class A beta-lactamases.

Authors:  R P Ambler; A F Coulson; J M Frère; J M Ghuysen; B Joris; M Forsman; R C Levesque; G Tiraby; S G Waley
Journal:  Biochem J       Date:  1991-05-15       Impact factor: 3.857

4.  Refined crystal structure of beta-lactamase from Citrobacter freundii indicates a mechanism for beta-lactam hydrolysis.

Authors:  C Oefner; A D'Arcy; J J Daly; K Gubernator; R L Charnas; I Heinze; C Hubschwerlen; F K Winkler
Journal:  Nature       Date:  1990-01-18       Impact factor: 49.962

5.  An enzyme from bacteria able to destroy penicillin. 1940.

Authors:  E P Abraham; E Chain
Journal:  Rev Infect Dis       Date:  1988 Jul-Aug

6.  Pseudomonas aeruginosa ceftolozane-tazobactam resistance development requires multiple mutations leading to overexpression and structural modification of AmpC.

Authors:  Gabriel Cabot; Sebastian Bruchmann; Xavier Mulet; Laura Zamorano; Bartolomé Moyà; Carlos Juan; Susanne Haussler; Antonio Oliver
Journal:  Antimicrob Agents Chemother       Date:  2014-03-17       Impact factor: 5.191

7.  Sequence and comparative analysis of three Enterobacter cloacae ampC beta-lactamase genes and their products.

Authors:  M Galleni; F Lindberg; S Normark; S Cole; N Honore; B Joris; J M Frere
Journal:  Biochem J       Date:  1988-03-15       Impact factor: 3.857

8.  Exploring sequence requirements for C₃/C₄ carboxylate recognition in the Pseudomonas aeruginosa cephalosporinase: Insights into plasticity of the AmpC β-lactamase.

Authors:  Sarah M Drawz; Magdalena Taracila; Emilia Caselli; Fabio Prati; Robert A Bonomo
Journal:  Protein Sci       Date:  2011-05-03       Impact factor: 6.725

9.  Mutations in β-Lactamase AmpC Increase Resistance of Pseudomonas aeruginosa Isolates to Antipseudomonal Cephalosporins.

Authors:  M Berrazeg; K Jeannot; Véronique Yvette Ntsogo Enguéné; I Broutin; S Loeffert; D Fournier; P Plésiat
Journal:  Antimicrob Agents Chemother       Date:  2015-07-27       Impact factor: 5.191

10.  UniProt: a worldwide hub of protein knowledge.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971
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  12 in total

Review 1.  Resistance to Novel β-Lactam-β-Lactamase Inhibitor Combinations: The "Price of Progress".

Authors:  Krisztina M Papp-Wallace; Andrew R Mack; Magdalena A Taracila; Robert A Bonomo
Journal:  Infect Dis Clin North Am       Date:  2020-09-30       Impact factor: 5.982

2.  A Unified Numbering Scheme for Class C β-Lactamases.

Authors:  Malcolm G P Page
Journal:  Antimicrob Agents Chemother       Date:  2020-02-21       Impact factor: 5.191

3.  Reexamining the Association of AmpC Variants with Enterobacter Species in the Context of Updated Taxonomy.

Authors:  Yu Feng; Ya Hu; Zhiyong Zong
Journal:  Antimicrob Agents Chemother       Date:  2021-09-13       Impact factor: 5.191

4.  Molecular and Kinetic Characterization of MOX-9, a Plasmid-Mediated Enzyme Representative of a Novel Sublineage of MOX-Type Class C β-Lactamases.

Authors:  Alessandra Piccirilli; Alberto Antonelli; Marco Maria D'Andrea; Sabrina Cherubini; Mariagrazia Perilli; Gian Maria Rossolini
Journal:  Antimicrob Agents Chemother       Date:  2022-08-30       Impact factor: 5.938

Review 5.  β-Lactam antibiotic targets and resistance mechanisms: from covalent inhibitors to substrates.

Authors:  Montserrat Mora-Ochomogo; Christopher T Lohans
Journal:  RSC Med Chem       Date:  2021-08-04

Review 6.  Class C β-Lactamases: Molecular Characteristics.

Authors:  Alain Philippon; Guillaume Arlet; Roger Labia; Bogdan I Iorga
Journal:  Clin Microbiol Rev       Date:  2022-04-18       Impact factor: 50.129

7.  Mechanisms of Resistance to Ceftolozane/Tazobactam in Pseudomonas aeruginosa: Results of the GERPA Multicenter Study.

Authors:  Damien Fournier; Romain Carrière; Maxime Bour; Emilie Grisot; Pauline Triponney; Cédric Muller; Jérôme Lemoine; Katy Jeannot; Patrick Plésiat
Journal:  Antimicrob Agents Chemother       Date:  2021-01-20       Impact factor: 5.191

8.  Structural Insights into Inhibition of the Acinetobacter-Derived Cephalosporinase ADC-7 by Ceftazidime and Its Boronic Acid Transition State Analog.

Authors:  Brandy N Curtis; Kali A Smolen; Sara J Barlow; Emilia Caselli; Fabio Prati; Magdalena A Taracila; Robert A Bonomo; Bradley J Wallar; Rachel A Powers
Journal:  Antimicrob Agents Chemother       Date:  2020-11-17       Impact factor: 5.191

9.  Adding Insult to Injury: Mechanistic Basis for How AmpC Mutations Allow Pseudomonas aeruginosa To Accelerate Cephalosporin Hydrolysis and Evade Avibactam.

Authors:  Cole L Slater; Judith Winogrodzki; Pablo A Fraile-Ribot; Antonio Oliver; Mazdak Khajehpour; Brian L Mark
Journal:  Antimicrob Agents Chemother       Date:  2020-08-20       Impact factor: 5.191

10.  Characterization of a Novel Chromosome-Encoded AmpC β-Lactamase Gene, bla PRC-1, in an Isolate of a Newly Classified Pseudomonas Species, Pseudomonas wenzhouensis A20, From Animal Farm Sewage.

Authors:  Peiyao Zhang; Xu Dong; Kexin Zhou; Tingting Zhu; Jialei Liang; Weina Shi; Mengdi Gao; Chunlin Feng; Qiaoling Li; Xueya Zhang; Ping Ren; Junwan Lu; Xi Lin; Kewei Li; Mei Zhu; Qiyu Bao; Hailin Zhang
Journal:  Front Microbiol       Date:  2021-12-17       Impact factor: 5.640
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