Literature DB >> 31709113

Synthesis and crystal structure of (E)-1,2-bis-[2-(methyl-sulfan-yl)phen-yl]diazene.

Jonas Hoffmann1,2, Thomas J Kuczmera1,2, Enno Lork3, Anne Staubitz1,2.   

Abstract

The title compound, C14H14N2S2, was obtained by transmetallation of 2,2'-bis-(tri-methyl-stann-yl)azo-benzene with methyl lithium, and subsequent quenching with dimethyl di-sulfide. The asymmetric unit comprises two half-mol-ecules, the other halves being completed by inversion symmetry at the midpoint of the azo group. The two mol-ecules show only slight differences with respect to N=N, S-N and aromatic C=C bonds or angles. Hirshfeld surface analysis reveals that except for one weak H⋯S inter-action, inter-molecular inter-actions are dominated by van der Waals forces only. © Hoffmann et al. 2019.

Entities:  

Keywords:  Hirshfeld surface analysis; azo­benzene; crystal structure; ortho-substitution; thiols; transmetallation

Year:  2019        PMID: 31709113      PMCID: PMC6829741          DOI: 10.1107/S2056989019014592

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The mol­ecular switch azo­benzene can undergo isomerization from its thermodynamically stable trans form to the metastable cis form using external stimuli such as light, temperature or pressure. Azo­benzenes are common motifs in dyes because of their high thermal and photochemical stability (Yesodha et al., 2004 ▸; Lagrasta et al., 1997 ▸). We recently presented methods to substitute azo­benzenes in the ortho, meta and para-positions with tri­methyl­tin as a novel functionalization method, giving rise to a dual tin–lithium exchange (Strüben et al., 2014 ▸, 2015 ▸; Hoffmann et al., 2019 ▸). In particular, we described the effect on the diortho-substitution on azo­benzenes with trimethyl-tetrels and the resulting effects on the switching properties (Hoffmann et al., 2019 ▸). In this context, we present here a novel diortho-substituted azo­benzene, (C7H7NS)2, (I), bearing two methyl­sulfide groups.

Structural commentary

The asymmetric unit of the title compound consists of two half-mol­ecules (Ia and Ib), the other halves being completed by application of inversion symmetry. The midpoints of the N=N bonds are located on inversion centres, resulting in a trans-configuration for the central N=N bonds (Fig. 1 ▸). As indicated by the C6A—C1A—N1A—N1A i and C6B—C1B—N1B—N1B ii [symmetry codes: (i) −x, 1 − y, −z; (ii) 1 − x, 1 − y, 1 − z] torsion angles of 13.2 (2) and −5.3 (2)°, respectively, in both mol­ecules the phenyl rings are twisted slightly with respect to the azo unit. A weak distortion is also found for the N1—C1—C2—S1 torsion angles of −3.06 (16)° for Ia and −2.06 (15)° for Ib. The N=N bond lengths differ marginally [1.255 (2) Å for Ia, 1.264 (2) Å for Ib], as do comparable C—C bonds. For example, the C1—C2 bond in Ia is at 1.408 (2) Å slightly shorter than Ib [1.415 (2) Å]. In comparison, this bond is longer than all other C—C distances in the ring because of repulsion of the nitro­gen and the sulfur atoms attached to C1 and C2, respectively. In both mol­ecules, the S⋯N distances [2.8625 (13) Å for Ia, 2.8761 (11) Å for Ib] are too long to be considered as attractive inter­actions. Fig. 2 ▸ represents an overlay plot of the two mol­ecules, showing there are only slight conformational differences.
Figure 1

Mol­ecular structures (Ia left, Ib right) of the title compound with labelling and displacement ellipsoids drawn at the 50% probability level. [Symmetry codes: (i) x, 1 − y, − z; (ii) 1 − x, 1 − y, 1 − z.]

Figure 2

Overlay presentation of mol­ecules Ia and Ib.

Supra­molecular features and Hirshfeld surface analysis

The packing of Ia and Ib in the crystal is shown in Fig. 3 ▸. Despite the presence of phenyl rings and a parallel arrangement of the mol­ecules, only weak offset π–π inter­actions are observed; the shortest centroid-to-centroid distance is Cg2⋯Cg2(1 − x, 1 − y, −z) = 3.7525 (8) Å with a slippage of 1.422 Å. To further investigate the inter­molecular inter­actions, Hirshfeld surfaces (Hirshfeld, 1977 ▸) and fingerprint plots were generated for both mol­ecules using CrystalExplorer17.5 (McKinnon et al., 2004 ▸). Hirshfeld surface analysis depicts inter­molecular inter­actions by different colors, representing short or long contacts and further the relative strength of the inter­action. The generated Hirshfeld surfaces mapped over d norm and the shape index are shown in Fig. 4 ▸ for Ia and in Fig. 5 ▸ for Ib. Whereas in Ia a significant inter­molecular inter­action is not apparent, characteristic red spots near S1B and H5B indicate weak S⋯H inter­actions in Ib. The respective supra­molecular arrangement is shown in Fig. 6 ▸. The sulfur atom S1B inter­acts with a phenyl proton (H4B) of another mol­ecule of Ib (S⋯H distance = 2.811 Å). The two-dimensional fingerprint plots for mol­ecule Ib for qu­anti­fication of the contributions of each type of non-covalent inter­action to the Hirshfeld surface (McKinnon et al., 2007 ▸) are given in Fig. 7 ▸. The packing is dominated by H⋯H contacts, representing van der Waals inter­actions (44.5% contribution to the surface), followed by C⋯H and S⋯H inter­actions, which contribute with 24.0% and 18.1%, respectively. The contributions of the N⋯H (8.6%) and C⋯C (4.8%) inter­actions are less significant.
Figure 3

Crystal packing in a view along the b axis. To distinguish the different mol­ecules, all sulfur atoms within the unit cell are labelled.

Figure 4

Hirshfeld surface of Ia mapped with d norm (top) and shape index (bottom), displaying no significant inter­molecular inter­actions.

Figure 5

Hirshfeld surface of Ib mapped with d norm (top) and shape index (bottom) with indication of an S⋯H inter­action.

Figure 6

Hirshfeld surface of Ib mapped with d norm (left) and shape index (right), together with the inter­action of a neighbouring mol­ecule.

Figure 7

Two-dimensional fingerprint plots for Ib, delineated into H⋯H, C⋯H, S⋯H, N⋯H, C⋯C inter­actions.

Database survey

A search of the Cambridge Structural Database (CSD version 5.4.0; update August 2019; Groom et al., 2016 ▸) revealed no azo­benzene-based structures that contain methyl thio­ethers. However, some general ortho-substituted azo­benzenes have been deposited (Yamamura et al., 2008 ▸; Kano et al., 2001 ▸; Hoffmann et al., 2019 ▸). Additionally, some diortho-substituted thio­azoxybenzenes were reported previously (Szczygelska-Tao et al., 1999 ▸; Kertmen et al., 2013 ▸). For the structure of an azo­benzene compound with an inversion centre at the N=N bond, see: Bohle et al. (2007 ▸).

Synthesis and crystallization

The synthesis of 2,2′-bis(tri­methyl­stann­yl)azo­benzene was recently described (Hoffmann et al., 2019 ▸). For further details of a similar transmetallation of a stannylated azo­benzene, see: Strüben et al. (2015 ▸). Dimethyl di­sulfide (99%) was purchased from Acros Organics and was used without further purification. Methyl lithium (1.88 M in diethyl ether, titrated against 2,2′-bi­pyridine) was purchased from Acros Organics. THF was purchased from VWR and was dried and degassed with a solvent purification system by Inert Technology. 2,2′-bis­(Methyl­thio)­azo­benzene In an inert reaction tube, 2,2-bis(tri­methyl­stann­yl)azo­benzene (200 mg, 0.39 mmol) was dissolved under Schlenk conditions in THF (12.5 ml) and cooled to 195 K. Then MeLi (1.88 M in diethyl ether, 0.63 ml, 1.18 mmol) was added within 5 min and after 1.5 h at this temperature, dimethyl di­sulfide (0.35 ml, 3.94 mmol) was added in one ration. The reaction mixture was warmed to 298 K over 14 h and the solvent was removed under reduced pressure. The obtained orange solid was purified in a silica column (Merck, 0.015–0.40 mm) with a gradient of eluents from n-pentane to di­chloro­methane giving dark-orange crystals (31 mg, 0.11 mmol; yield 29%). Single crystals suitable for X-ray analysis were obtained by slow evaporation from a saturated n-heptane solution. (500 MHz, CDCl3): δ = 7.76 (dd, 3 J = 8.1 Hz, 4 J = 1.4 Hz, 2H, H6), 7.40 (td, 3 J = 8.0, 7.3 Hz, 4 J = 1.4 Hz, 2H, H4), 7.32 (dd, 3 J = 8.0 Hz, 4 J = 1.1 Hz, 2H, H3), 7.20 (td, 3 J = 8.1, 7.3Hz, 4 J = 1.1 Hz, 2H, H5), 2.53 (s, 6H, H7) ppm. (125 MHz, CDCl3): δ = 149.08 (C1), 141.00 (C2), 131.56 (C4), 124.81 (C3), 124.75 (C5), 118.02 (C6), 15.02 (C7) ppm. HRMS (EI, 70 eV, MAT95, direct): m/z: calculated for C14H14N2S2 + 274.05929 found 274.05944. MS (EI): m/z 273.9 (5%) [M]+, 258.9 (100%) [M − CH3]+, 243.9 (5%) [M − C2H6]+, 107.9 (13%) [M − C8H10N2S]+. IR (ATR): ν = 3059 (w), 2986 (w), 2961 (w), 2918 (w), 2852 (w), 1575 (m), 1561 (w), 1457 (m), 1433 (s), 1298 (w), 1249 (w), 1217 (m), 1162 (m), 1065 (s), 1035 (m), 951 (m), 863 (w), 803 (w), 761 (s), 726 (s), 674 (s) cm−1. M.p.: 429 K : (n-penta­ne: di­chloro­methane 3:1): 0.55.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 1 ▸. All H atoms were positioned geometrically and refined using a riding model: C—H = 0.95–0.98 Å with U iso(H) = 1.5U eq (C-meth­yl) and 1.2U eq(C) (C-phen­yl).
Table 1

Experimental details

Crystal data
Chemical formulaC14H14N2S2
M r 274.39
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)13.0656 (5), 12.1787 (4), 8.3471 (3)
β (°)96.154 (1)
V3)1320.55 (8)
Z 4
Radiation typeMo Kα
μ (mm−1)0.39
Crystal size (mm)0.21 × 0.18 × 0.17
 
Data collection
DiffractometerBruker D8 Venture CMOS
Absorption correctionMulti-scan (SADABS; Krause et al., 2015)
T min, T max 0.580, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections21000, 3292, 2842
R int 0.065
(sin θ/λ)max−1)0.668
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.034, 0.089, 1.04
No. of reflections3292
No. of parameters165
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.44, −0.38

Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸) and OLEX2 (Dolomanov et al., 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019014592/wm5522sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019014592/wm5522Isup2.hkl CCDC references: 1961741, 1961741 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H14N2S2F(000) = 576
Mr = 274.39Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 13.0656 (5) ÅCell parameters from 9874 reflections
b = 12.1787 (4) Åθ = 2.3–28.3°
c = 8.3471 (3) ŵ = 0.39 mm1
β = 96.154 (1)°T = 100 K
V = 1320.55 (8) Å3Block, dark orange
Z = 40.21 × 0.18 × 0.17 mm
Bruker D8 Venture CMOS diffractometer3292 independent reflections
Radiation source: microfocus sealed X-ray tube, Incoatec Iµs2842 reflections with I > 2σ(I)
Mirror optics monochromatorRint = 0.065
Detector resolution: 7.9 pixels mm-1θmax = 28.3°, θmin = 2.3°
ω and φ scansh = −17→17
Absorption correction: multi-scan (SADABS; Krause et al., 2015)k = −16→16
Tmin = 0.580, Tmax = 0.746l = −11→10
21000 measured reflections
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0401P)2 + 0.6716P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3292 reflectionsΔρmax = 0.44 e Å3
165 parametersΔρmin = −0.38 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S1A0.03738 (3)0.22038 (3)0.07109 (4)0.01750 (10)
N1A0.00557 (9)0.45111 (10)0.02308 (14)0.0144 (2)
C1A0.09596 (10)0.43239 (11)0.13020 (16)0.0133 (3)
C2A0.12139 (10)0.32133 (11)0.15962 (16)0.0136 (3)
C3A0.21227 (10)0.29785 (12)0.25937 (17)0.0163 (3)
H3A0.2328730.2237330.2780650.020*
C4A0.27191 (10)0.38209 (12)0.33050 (17)0.0175 (3)
H4A0.3333630.3648840.3971790.021*
C5A0.24372 (10)0.49160 (12)0.30637 (17)0.0170 (3)
H5A0.2843850.5485380.3584320.020*
C6A0.15556 (10)0.51642 (12)0.20540 (16)0.0153 (3)
H6A0.1357170.5908240.1874110.018*
C7A0.09736 (12)0.09607 (12)0.15119 (19)0.0212 (3)
H7AA0.1082960.1008740.2689850.032*
H7AB0.1637490.0863470.1084050.032*
H7AC0.0526900.0333320.1198050.032*
S1B0.68646 (3)0.36826 (3)0.29648 (4)0.01522 (10)
N1B0.53057 (8)0.47643 (9)0.45728 (13)0.0111 (2)
C1B0.54712 (9)0.53356 (10)0.31394 (15)0.0107 (2)
C2B0.62096 (9)0.48706 (11)0.22188 (15)0.0109 (2)
C3B0.63884 (10)0.53770 (11)0.07713 (16)0.0135 (3)
H3B0.6880840.5074810.0137150.016*
C4B0.58521 (10)0.63170 (11)0.02550 (16)0.0149 (3)
H4B0.5972710.664586−0.0739660.018*
C5B0.51371 (10)0.67861 (11)0.11794 (16)0.0141 (3)
H5B0.4783730.7439230.0829000.017*
C6B0.49478 (10)0.62917 (11)0.26090 (16)0.0121 (3)
H6B0.4457490.6604640.3236990.015*
C7B0.77056 (12)0.33890 (13)0.1449 (2)0.0230 (3)
H7BA0.7294770.3271710.0410430.035*
H7BB0.8106130.2726180.1749840.035*
H7BC0.8174180.4009220.1361020.035*
U11U22U33U12U13U23
S1A0.01446 (17)0.01894 (19)0.01851 (19)−0.00155 (13)−0.00094 (13)−0.00187 (13)
N1A0.0110 (5)0.0196 (6)0.0125 (5)0.0009 (4)0.0008 (4)−0.0003 (4)
C1A0.0098 (6)0.0203 (7)0.0100 (6)−0.0002 (5)0.0022 (5)0.0005 (5)
C2A0.0102 (6)0.0199 (7)0.0111 (6)−0.0010 (5)0.0032 (5)−0.0020 (5)
C3A0.0129 (6)0.0205 (7)0.0155 (7)0.0018 (5)0.0011 (5)0.0019 (5)
C4A0.0112 (6)0.0267 (7)0.0139 (6)0.0008 (5)−0.0013 (5)0.0017 (6)
C5A0.0136 (6)0.0250 (7)0.0124 (6)−0.0033 (5)0.0013 (5)−0.0021 (5)
C6A0.0141 (6)0.0194 (7)0.0128 (6)−0.0005 (5)0.0029 (5)0.0000 (5)
C7A0.0238 (7)0.0182 (7)0.0215 (7)−0.0003 (6)0.0026 (6)0.0015 (6)
S1B0.01542 (17)0.01406 (17)0.01718 (18)0.00275 (12)0.00642 (13)0.00248 (12)
N1B0.0103 (5)0.0140 (5)0.0090 (5)−0.0019 (4)0.0012 (4)−0.0012 (4)
C1B0.0097 (5)0.0135 (6)0.0088 (6)−0.0028 (5)0.0008 (5)−0.0014 (5)
C2B0.0096 (5)0.0112 (6)0.0115 (6)−0.0013 (5)0.0001 (5)−0.0013 (5)
C3B0.0124 (6)0.0176 (6)0.0111 (6)−0.0014 (5)0.0042 (5)−0.0018 (5)
C4B0.0160 (6)0.0180 (7)0.0108 (6)−0.0030 (5)0.0020 (5)0.0019 (5)
C5B0.0142 (6)0.0146 (6)0.0130 (6)0.0002 (5)0.0000 (5)0.0011 (5)
C6B0.0109 (6)0.0148 (6)0.0106 (6)−0.0011 (5)0.0011 (5)−0.0020 (5)
C7B0.0229 (7)0.0210 (7)0.0276 (8)0.0061 (6)0.0144 (6)0.0013 (6)
S1A—C2A1.7574 (14)S1B—C2B1.7605 (13)
S1A—C7A1.8002 (15)S1B—C7B1.7983 (15)
N1A—N1Ai1.255 (2)N1B—N1Bii1.264 (2)
N1A—C1A1.4211 (17)N1B—C1B1.4205 (16)
C1A—C2A1.4080 (19)C1B—C2B1.4145 (18)
C1A—C6A1.3940 (19)C1B—C6B1.3981 (18)
C2A—C3A1.4046 (18)C2B—C3B1.3983 (18)
C3A—H3A0.9500C3B—H3B0.9500
C3A—C4A1.383 (2)C3B—C4B1.3866 (19)
C4A—H4A0.9500C4B—H4B0.9500
C4A—C5A1.393 (2)C4B—C5B1.3961 (19)
C5A—H5A0.9500C5B—H5B0.9500
C5A—C6A1.3857 (19)C5B—C6B1.3824 (19)
C6A—H6A0.9500C6B—H6B0.9500
C7A—H7AA0.9800C7B—H7BA0.9800
C7A—H7AB0.9800C7B—H7BB0.9800
C7A—H7AC0.9800C7B—H7BC0.9800
C2A—S1A—C7A101.82 (7)C2B—S1B—C7B103.00 (7)
N1Ai—N1A—C1A113.98 (14)N1Bii—N1B—C1B114.53 (14)
C2A—C1A—N1A115.37 (12)C2B—C1B—N1B115.83 (11)
C6A—C1A—N1A123.50 (13)C6B—C1B—N1B124.14 (11)
C6A—C1A—C2A121.11 (12)C6B—C1B—C2B120.02 (12)
C1A—C2A—S1A118.27 (10)C1B—C2B—S1B118.09 (10)
C3A—C2A—S1A123.84 (11)C3B—C2B—S1B123.24 (10)
C3A—C2A—C1A117.89 (12)C3B—C2B—C1B118.67 (12)
C2A—C3A—H3A119.8C2B—C3B—H3B119.8
C4A—C3A—C2A120.33 (13)C4B—C3B—C2B120.46 (12)
C4A—C3A—H3A119.8C4B—C3B—H3B119.8
C3A—C4A—H4A119.3C3B—C4B—H4B119.6
C3A—C4A—C5A121.35 (13)C3B—C4B—C5B120.79 (12)
C5A—C4A—H4A119.3C5B—C4B—H4B119.6
C4A—C5A—H5A120.4C4B—C5B—H5B120.3
C6A—C5A—C4A119.12 (13)C6B—C5B—C4B119.42 (13)
C6A—C5A—H5A120.4C6B—C5B—H5B120.3
C1A—C6A—H6A119.9C1B—C6B—H6B119.7
C5A—C6A—C1A120.10 (13)C5B—C6B—C1B120.63 (12)
C5A—C6A—H6A119.9C5B—C6B—H6B119.7
S1A—C7A—H7AA109.5S1B—C7B—H7BA109.5
S1A—C7A—H7AB109.5S1B—C7B—H7BB109.5
S1A—C7A—H7AC109.5S1B—C7B—H7BC109.5
H7AA—C7A—H7AB109.5H7BA—C7B—H7BB109.5
H7AA—C7A—H7AC109.5H7BA—C7B—H7BC109.5
H7AB—C7A—H7AC109.5H7BB—C7B—H7BC109.5
S1A—C2A—C3A—C4A−177.02 (11)S1B—C2B—C3B—C4B−179.51 (10)
N1Ai—N1A—C1A—C2A−168.19 (14)N1Bii—N1B—C1B—C2B175.48 (13)
N1Ai—N1A—C1A—C6A13.2 (2)N1Bii—N1B—C1B—C6B−5.3 (2)
N1A—C1A—C2A—S1A−3.06 (16)N1B—C1B—C2B—S1B−2.06 (15)
N1A—C1A—C2A—C3A177.45 (12)N1B—C1B—C2B—C3B178.30 (11)
N1A—C1A—C6A—C5A−178.94 (12)N1B—C1B—C6B—C5B−178.56 (12)
C1A—C2A—C3A—C4A2.4 (2)C1B—C2B—C3B—C4B0.11 (19)
C2A—C1A—C6A—C5A2.5 (2)C2B—C1B—C6B—C5B0.61 (19)
C2A—C3A—C4A—C5A0.3 (2)C2B—C3B—C4B—C5B1.1 (2)
C3A—C4A—C5A—C6A−1.8 (2)C3B—C4B—C5B—C6B−1.4 (2)
C4A—C5A—C6A—C1A0.4 (2)C4B—C5B—C6B—C1B0.54 (19)
C6A—C1A—C2A—S1A175.63 (10)C6B—C1B—C2B—S1B178.71 (10)
C6A—C1A—C2A—C3A−3.86 (19)C6B—C1B—C2B—C3B−0.94 (18)
C7A—S1A—C2A—C1A−176.89 (11)C7B—S1B—C2B—C1B−179.91 (10)
C7A—S1A—C2A—C3A2.57 (13)C7B—S1B—C2B—C3B−0.28 (13)
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Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  7 in total

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