Literature DB >> 31699931

Ancient Rome: A genetic crossroads of Europe and the Mediterranean.

Margaret L Antonio1, Ziyue Gao2,3, Hannah M Moots4, Ron Pinhasi5, Jonathan K Pritchard6,3,7, Michaela Lucci8, Francesca Candilio9,10, Susanna Sawyer11, Victoria Oberreiter11, Diego Calderon1, Katharina Devitofranceschi11, Rachael C Aikens1, Serena Aneli12, Fulvio Bartoli13, Alessandro Bedini14, Olivia Cheronet11, Daniel J Cotter3, Daniel M Fernandes11,15, Gabriella Gasperetti16, Renata Grifoni17, Alessandro Guidi18, Francesco La Pastina10, Ersilia Loreti19, Daniele Manacorda20, Giuseppe Matullo12, Simona Morretta21, Alessia Nava8,22, Vincenzo Fiocchi Nicolai23, Federico Nomi18, Carlo Pavolini24, Massimo Pentiricci19, Philippe Pergola25, Marina Piranomonte26, Ryan Schmidt27, Giandomenico Spinola28, Alessandra Sperduti22,29, Mauro Rubini30,7, Luca Bondioli22, Alfredo Coppa31.   

Abstract

Ancient Rome was the capital of an empire of ~70 million inhabitants, but little is known about the genetics of ancient Romans. Here we present 127 genomes from 29 archaeological sites in and around Rome, spanning the past 12,000 years. We observe two major prehistoric ancestry transitions: one with the introduction of farming and another prior to the Iron Age. By the founding of Rome, the genetic composition of the region approximated that of modern Mediterranean populations. During the Imperial period, Rome's population received net immigration from the Near East, followed by an increase in genetic contributions from Europe. These ancestry shifts mirrored the geopolitical affiliations of Rome and were accompanied by marked interindividual diversity, reflecting gene flow from across the Mediterranean, Europe, and North Africa.
Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2019        PMID: 31699931      PMCID: PMC7093155          DOI: 10.1126/science.aay6826

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  20 in total

1.  Fast model-based estimation of ancestry in unrelated individuals.

Authors:  David H Alexander; John Novembre; Kenneth Lange
Journal:  Genome Res       Date:  2009-07-31       Impact factor: 9.043

2.  Population genomics of Bronze Age Eurasia.

Authors:  Morten E Allentoft; Martin Sikora; Karl-Göran Sjögren; Simon Rasmussen; Morten Rasmussen; Jesper Stenderup; Peter B Damgaard; Hannes Schroeder; Torbjörn Ahlström; Lasse Vinner; Anna-Sapfo Malaspinas; Ashot Margaryan; Tom Higham; David Chivall; Niels Lynnerup; Lise Harvig; Justyna Baron; Philippe Della Casa; Paweł Dąbrowski; Paul R Duffy; Alexander V Ebel; Andrey Epimakhov; Karin Frei; Mirosław Furmanek; Tomasz Gralak; Andrey Gromov; Stanisław Gronkiewicz; Gisela Grupe; Tamás Hajdu; Radosław Jarysz; Valeri Khartanovich; Alexandr Khokhlov; Viktória Kiss; Jan Kolář; Aivar Kriiska; Irena Lasak; Cristina Longhi; George McGlynn; Algimantas Merkevicius; Inga Merkyte; Mait Metspalu; Ruzan Mkrtchyan; Vyacheslav Moiseyev; László Paja; György Pálfi; Dalia Pokutta; Łukasz Pospieszny; T Douglas Price; Lehti Saag; Mikhail Sablin; Natalia Shishlina; Václav Smrčka; Vasilii I Soenov; Vajk Szeverényi; Gusztáv Tóth; Synaru V Trifanova; Liivi Varul; Magdolna Vicze; Levon Yepiskoposyan; Vladislav Zhitenev; Ludovic Orlando; Thomas Sicheritz-Pontén; Søren Brunak; Rasmus Nielsen; Kristian Kristiansen; Eske Willerslev
Journal:  Nature       Date:  2015-06-11       Impact factor: 49.962

3.  Early farmers from across Europe directly descended from Neolithic Aegeans.

Authors:  Zuzana Hofmanová; Susanne Kreutzer; Garrett Hellenthal; Christian Sell; Yoan Diekmann; David Díez-Del-Molino; Lucy van Dorp; Saioa López; Athanasios Kousathanas; Vivian Link; Karola Kirsanow; Lara M Cassidy; Rui Martiniano; Melanie Strobel; Amelie Scheu; Kostas Kotsakis; Paul Halstead; Sevi Triantaphyllou; Nina Kyparissi-Apostolika; Dushka Urem-Kotsou; Christina Ziota; Fotini Adaktylou; Shyamalika Gopalan; Dean M Bobo; Laura Winkelbach; Jens Blöcher; Martina Unterländer; Christoph Leuenberger; Çiler Çilingiroğlu; Barbara Horejs; Fokke Gerritsen; Stephen J Shennan; Daniel G Bradley; Mathias Currat; Krishna R Veeramah; Daniel Wegmann; Mark G Thomas; Christina Papageorgopoulou; Joachim Burger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-06       Impact factor: 11.205

4.  Inference of population structure using dense haplotype data.

Authors:  Daniel John Lawson; Garrett Hellenthal; Simon Myers; Daniel Falush
Journal:  PLoS Genet       Date:  2012-01-26       Impact factor: 5.917

5.  Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:  Iosif Lazaridis; Nick Patterson; Alissa Mittnik; Gabriel Renaud; Swapan Mallick; Karola Kirsanow; Peter H Sudmant; Joshua G Schraiber; Sergi Castellano; Mark Lipson; Bonnie Berger; Christos Economou; Ruth Bollongino; Qiaomei Fu; Kirsten I Bos; Susanne Nordenfelt; Heng Li; Cesare de Filippo; Kay Prüfer; Susanna Sawyer; Cosimo Posth; Wolfgang Haak; Fredrik Hallgren; Elin Fornander; Nadin Rohland; Dominique Delsate; Michael Francken; Jean-Michel Guinet; Joachim Wahl; George Ayodo; Hamza A Babiker; Graciela Bailliet; Elena Balanovska; Oleg Balanovsky; Ramiro Barrantes; Gabriel Bedoya; Haim Ben-Ami; Judit Bene; Fouad Berrada; Claudio M Bravi; Francesca Brisighelli; George B J Busby; Francesco Cali; Mikhail Churnosov; David E C Cole; Daniel Corach; Larissa Damba; George van Driem; Stanislav Dryomov; Jean-Michel Dugoujon; Sardana A Fedorova; Irene Gallego Romero; Marina Gubina; Michael Hammer; Brenna M Henn; Tor Hervig; Ugur Hodoglugil; Aashish R Jha; Sena Karachanak-Yankova; Rita Khusainova; Elza Khusnutdinova; Rick Kittles; Toomas Kivisild; William Klitz; Vaidutis Kučinskas; Alena Kushniarevich; Leila Laredj; Sergey Litvinov; Theologos Loukidis; Robert W Mahley; Béla Melegh; Ene Metspalu; Julio Molina; Joanna Mountain; Klemetti Näkkäläjärvi; Desislava Nesheva; Thomas Nyambo; Ludmila Osipova; Jüri Parik; Fedor Platonov; Olga Posukh; Valentino Romano; Francisco Rothhammer; Igor Rudan; Ruslan Ruizbakiev; Hovhannes Sahakyan; Antti Sajantila; Antonio Salas; Elena B Starikovskaya; Ayele Tarekegn; Draga Toncheva; Shahlo Turdikulova; Ingrida Uktveryte; Olga Utevska; René Vasquez; Mercedes Villena; Mikhail Voevoda; Cheryl A Winkler; Levon Yepiskoposyan; Pierre Zalloua; Tatijana Zemunik; Alan Cooper; Cristian Capelli; Mark G Thomas; Andres Ruiz-Linares; Sarah A Tishkoff; Lalji Singh; Kumarasamy Thangaraj; Richard Villems; David Comas; Rem Sukernik; Mait Metspalu; Matthias Meyer; Evan E Eichler; Joachim Burger; Montgomery Slatkin; Svante Pääbo; Janet Kelso; David Reich; Johannes Krause
Journal:  Nature       Date:  2014-09-18       Impact factor: 49.962

6.  The genomic history of southeastern Europe.

Authors:  Iain Mathieson; Songül Alpaslan-Roodenberg; Cosimo Posth; Anna Szécsényi-Nagy; Nadin Rohland; Swapan Mallick; Iñigo Olalde; Nasreen Broomandkhoshbacht; Francesca Candilio; Olivia Cheronet; Daniel Fernandes; Matthew Ferry; Beatriz Gamarra; Gloria González Fortes; Wolfgang Haak; Eadaoin Harney; Eppie Jones; Denise Keating; Ben Krause-Kyora; Isil Kucukkalipci; Megan Michel; Alissa Mittnik; Kathrin Nägele; Mario Novak; Jonas Oppenheimer; Nick Patterson; Saskia Pfrengle; Kendra Sirak; Kristin Stewardson; Stefania Vai; Stefan Alexandrov; Kurt W Alt; Radian Andreescu; Dragana Antonović; Abigail Ash; Nadezhda Atanassova; Krum Bacvarov; Mende Balázs Gusztáv; Hervé Bocherens; Michael Bolus; Adina Boroneanţ; Yavor Boyadzhiev; Alicja Budnik; Josip Burmaz; Stefan Chohadzhiev; Nicholas J Conard; Richard Cottiaux; Maja Čuka; Christophe Cupillard; Dorothée G Drucker; Nedko Elenski; Michael Francken; Borislava Galabova; Georgi Ganetsovski; Bernard Gély; Tamás Hajdu; Veneta Handzhyiska; Katerina Harvati; Thomas Higham; Stanislav Iliev; Ivor Janković; Ivor Karavanić; Douglas J Kennett; Darko Komšo; Alexandra Kozak; Damian Labuda; Martina Lari; Catalin Lazar; Maleen Leppek; Krassimir Leshtakov; Domenico Lo Vetro; Dženi Los; Ivaylo Lozanov; Maria Malina; Fabio Martini; Kath McSweeney; Harald Meller; Marko Menđušić; Pavel Mirea; Vyacheslav Moiseyev; Vanya Petrova; T Douglas Price; Angela Simalcsik; Luca Sineo; Mario Šlaus; Vladimir Slavchev; Petar Stanev; Andrej Starović; Tamás Szeniczey; Sahra Talamo; Maria Teschler-Nicola; Corinne Thevenet; Ivan Valchev; Frédérique Valentin; Sergey Vasilyev; Fanica Veljanovska; Svetlana Venelinova; Elizaveta Veselovskaya; Bence Viola; Cristian Virag; Joško Zaninović; Steve Zäuner; Philipp W Stockhammer; Giulio Catalano; Raiko Krauß; David Caramelli; Gunita Zariņa; Bisserka Gaydarska; Malcolm Lillie; Alexey G Nikitin; Inna Potekhina; Anastasia Papathanasiou; Dušan Borić; Clive Bonsall; Johannes Krause; Ron Pinhasi; David Reich
Journal:  Nature       Date:  2018-02-21       Impact factor: 49.962

7.  Visualizing spatial population structure with estimated effective migration surfaces.

Authors:  Desislava Petkova; John Novembre; Matthew Stephens
Journal:  Nat Genet       Date:  2015-12-07       Impact factor: 38.330

8.  Genome-wide patterns of selection in 230 ancient Eurasians.

Authors:  Iain Mathieson; Iosif Lazaridis; Nadin Rohland; Swapan Mallick; Nick Patterson; Songül Alpaslan Roodenberg; Eadaoin Harney; Kristin Stewardson; Daniel Fernandes; Mario Novak; Kendra Sirak; Cristina Gamba; Eppie R Jones; Bastien Llamas; Stanislav Dryomov; Joseph Pickrell; Juan Luís Arsuaga; José María Bermúdez de Castro; Eudald Carbonell; Fokke Gerritsen; Aleksandr Khokhlov; Pavel Kuznetsov; Marina Lozano; Harald Meller; Oleg Mochalov; Vyacheslav Moiseyev; Manuel A Rojo Guerra; Jacob Roodenberg; Josep Maria Vergès; Johannes Krause; Alan Cooper; Kurt W Alt; Dorcas Brown; David Anthony; Carles Lalueza-Fox; Wolfgang Haak; Ron Pinhasi; David Reich
Journal:  Nature       Date:  2015-11-23       Impact factor: 49.962

9.  Understanding 6th-century barbarian social organization and migration through paleogenomics.

Authors:  Carlos Eduardo G Amorim; Stefania Vai; Cosimo Posth; Alessandra Modi; István Koncz; Susanne Hakenbeck; Maria Cristina La Rocca; Balazs Mende; Dean Bobo; Walter Pohl; Luisella Pejrani Baricco; Elena Bedini; Paolo Francalacci; Caterina Giostra; Tivadar Vida; Daniel Winger; Uta von Freeden; Silvia Ghirotto; Martina Lari; Guido Barbujani; Johannes Krause; David Caramelli; Patrick J Geary; Krishna R Veeramah
Journal:  Nat Commun       Date:  2018-09-11       Impact factor: 14.919

10.  The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean.

Authors:  Daniel M Fernandes; Alissa Mittnik; Iñigo Olalde; Iosif Lazaridis; Olivia Cheronet; Nadin Rohland; Swapan Mallick; Rebecca Bernardos; Nasreen Broomandkhoshbacht; Jens Carlsson; Brendan J Culleton; Matthew Ferry; Beatriz Gamarra; Martina Lari; Matthew Mah; Megan Michel; Alessandra Modi; Mario Novak; Jonas Oppenheimer; Kendra A Sirak; Kristin Stewardson; Kirsten Mandl; Constanze Schattke; Kadir T Özdoğan; Michaela Lucci; Gabriella Gasperetti; Francesca Candilio; Gianfranca Salis; Stefania Vai; Edgard Camarós; Carla Calò; Giulio Catalano; Marián Cueto; Vincenza Forgia; Marina Lozano; Elisabetta Marini; Margherita Micheletti; Roberto M Miccichè; Maria R Palombo; Damià Ramis; Vittoria Schimmenti; Pau Sureda; Luís Teira; Maria Teschler-Nicola; Douglas J Kennett; Carles Lalueza-Fox; Nick Patterson; Luca Sineo; Alfredo Coppa; David Caramelli; Ron Pinhasi; David Reich
Journal:  Nat Ecol Evol       Date:  2020-02-24       Impact factor: 15.460

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  32 in total

1.  Human Prehistoric Demography Revealed by the Polymorphic Pattern of CpG Transitions.

Authors:  Xiaoming Liu
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

2.  Dairying, diseases and the evolution of lactase persistence in Europe.

Authors:  Richard P Evershed; George Davey Smith; Mélanie Roffet-Salque; Adrian Timpson; Yoan Diekmann; Matthew S Lyon; Lucy J E Cramp; Emmanuelle Casanova; Jessica Smyth; Helen L Whelton; Julie Dunne; Veronika Brychova; Lucija Šoberl; Pascale Gerbault; Rosalind E Gillis; Volker Heyd; Emily Johnson; Iain Kendall; Katie Manning; Arkadiusz Marciniak; Alan K Outram; Jean-Denis Vigne; Stephen Shennan; Andrew Bevan; Sue Colledge; Lyndsay Allason-Jones; Luc Amkreutz; Alexandra Anders; Rose-Marie Arbogast; Adrian Bălăşescu; Eszter Bánffy; Alistair Barclay; Anja Behrens; Peter Bogucki; Ángel Carrancho Alonso; José Miguel Carretero; Nigel Cavanagh; Erich Claßen; Hipolito Collado Giraldo; Matthias Conrad; Piroska Csengeri; Lech Czerniak; Maciej Dębiec; Anthony Denaire; László Domboróczki; Christina Donald; Julia Ebert; Christopher Evans; Marta Francés-Negro; Detlef Gronenborn; Fabian Haack; Matthias Halle; Caroline Hamon; Roman Hülshoff; Michael Ilett; Eneko Iriarte; János Jakucs; Christian Jeunesse; Melanie Johnson; Andy M Jones; Necmi Karul; Dmytro Kiosak; Nadezhda Kotova; Rüdiger Krause; Saskia Kretschmer; Marta Krüger; Philippe Lefranc; Olivia Lelong; Eva Lenneis; Andrey Logvin; Friedrich Lüth; Tibor Marton; Jane Marley; Richard Mortimer; Luiz Oosterbeek; Krisztián Oross; Juraj Pavúk; Joachim Pechtl; Pierre Pétrequin; Joshua Pollard; Richard Pollard; Dominic Powlesland; Joanna Pyzel; Pál Raczky; Andrew Richardson; Peter Rowe; Stephen Rowland; Ian Rowlandson; Thomas Saile; Katalin Sebők; Wolfram Schier; Germo Schmalfuß; Svetlana Sharapova; Helen Sharp; Alison Sheridan; Irina Shevnina; Iwona Sobkowiak-Tabaka; Peter Stadler; Harald Stäuble; Astrid Stobbe; Darko Stojanovski; Nenad Tasić; Ivo van Wijk; Ivana Vostrovská; Jasna Vuković; Sabine Wolfram; Andrea Zeeb-Lanz; Mark G Thomas
Journal:  Nature       Date:  2022-07-27       Impact factor: 69.504

3.  Ancient Maltese genomes and the genetic geography of Neolithic Europe.

Authors:  Bruno Ariano; Valeria Mattiangeli; Emily M Breslin; Eóin W Parkinson; T Rowan McLaughlin; Jess E Thompson; Ronika K Power; Jay T Stock; Bernardette Mercieca-Spiteri; Simon Stoddart; Caroline Malone; Shyam Gopalakrishnan; Lara M Cassidy; Daniel G Bradley
Journal:  Curr Biol       Date:  2022-05-18       Impact factor: 10.900

Review 4.  Population genetics: past, present, and future.

Authors:  Atsuko Okazaki; Satoru Yamazaki; Ituro Inoue; Jurg Ott
Journal:  Hum Genet       Date:  2020-07-18       Impact factor: 4.132

5.  The mitogenome portrait of Umbria in Central Italy as depicted by contemporary inhabitants and pre-Roman remains.

Authors:  Alessandra Modi; Hovirag Lancioni; Irene Cardinali; Marco R Capodiferro; Nicola Rambaldi Migliore; Abir Hussein; Christina Strobl; Martin Bodner; Lisa Schnaller; Catarina Xavier; Ermanno Rizzi; Laura Bonomi Ponzi; Stefania Vai; Alessandro Raveane; Bruno Cavadas; Ornella Semino; Antonio Torroni; Anna Olivieri; Martina Lari; Luisa Pereira; Walther Parson; David Caramelli; Alessandro Achilli
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.379

6.  A Genetic History of the Near East from an aDNA Time Course Sampling Eight Points in the Past 4,000 Years.

Authors:  Marc Haber; Joyce Nassar; Mohamed A Almarri; Tina Saupe; Lehti Saag; Samuel J Griffith; Claude Doumet-Serhal; Julien Chanteau; Muntaha Saghieh-Beydoun; Yali Xue; Christiana L Scheib; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2020-05-28       Impact factor: 11.025

7.  Evaluating genotype imputation pipeline for ultra-low coverage ancient genomes.

Authors:  Ruoyun Hui; Eugenia D'Atanasio; Lara M Cassidy; Christiana L Scheib; Toomas Kivisild
Journal:  Sci Rep       Date:  2020-10-29       Impact factor: 4.379

8.  The genomic history of the Aegean palatial civilizations.

Authors:  Florian Clemente; Martina Unterländer; Olga Dolgova; Carlos Eduardo G Amorim; Francisco Coroado-Santos; Samuel Neuenschwander; Elissavet Ganiatsou; Diana I Cruz Dávalos; Lucas Anchieri; Frédéric Michaud; Laura Winkelbach; Jens Blöcher; Yami Ommar Arizmendi Cárdenas; Bárbara Sousa da Mota; Eleni Kalliga; Angelos Souleles; Ioannis Kontopoulos; Georgia Karamitrou-Mentessidi; Olga Philaniotou; Adamantios Sampson; Dimitra Theodorou; Metaxia Tsipopoulou; Ioannis Akamatis; Paul Halstead; Kostas Kotsakis; Dushka Urem-Kotsou; Diamantis Panagiotopoulos; Christina Ziota; Sevasti Triantaphyllou; Olivier Delaneau; Jeffrey D Jensen; J Víctor Moreno-Mayar; Joachim Burger; Vitor C Sousa; Oscar Lao; Anna-Sapfo Malaspinas; Christina Papageorgopoulou
Journal:  Cell       Date:  2021-04-29       Impact factor: 41.582

9.  Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe.

Authors:  Adam B Rohrlach; Luka Papac; Ainash Childebayeva; Maïté Rivollat; Vanessa Villalba-Mouco; Gunnar U Neumann; Sandra Penske; Eirini Skourtanioti; Marieke van de Loosdrecht; Murat Akar; Kamen Boyadzhiev; Yavor Boyadzhiev; Marie-France Deguilloux; Miroslav Dobeš; Yilmaz S Erdal; Michal Ernée; Marcella Frangipane; Mirosław Furmanek; Susanne Friederich; Emmanuel Ghesquière; Agata Hałuszko; Svend Hansen; Mario Küßner; Marcello Mannino; Rana Özbal; Sabine Reinhold; Stéphane Rottier; Domingo Carlos Salazar-García; Jorge Soler Diaz; Philipp W Stockhammer; Consuelo Roca de Togores Muñoz; K Aslihan Yener; Cosimo Posth; Johannes Krause; Alexander Herbig; Wolfgang Haak
Journal:  Sci Rep       Date:  2021-07-22       Impact factor: 4.379

10.  How Does Diet Influence Our Lives? Evaluating the Relationship between Isotopic Signatures and Mortality Patterns in Italian Roman Imperial and Medieval Periods.

Authors:  Marica Baldoni; Alessandra Nardi; Flavio De Angelis; Olga Rickards; Cristina Martínez-Labarga
Journal:  Molecules       Date:  2021-06-25       Impact factor: 4.411

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