| Literature DB >> 31697426 |
Nitika Grover1, Gemma M Locke1, Keith J Flanagan1, Michael H R Beh1,2, Alison Thompson2, Mathias O Senge1,3,4.
Abstract
Connecting two <span class="Chemical">porphyrin units in a rigid linear fashion, without any undesired electron delocalization or communication between the chromophores, remains a synthetic challenge. Herein, a broad library of functionally diverse multi-<class="Chemical">span class="Chemical">porphyrin arrays that incorporate the non-traditional rigid linker groups cubane and bicyclo[1.1.1]pentane (BCP) is described. A robust, reliable, and versatile synthetic procedure was employed to access porphyrin-cubane/BCP-porphyrin arrays, representing the largest non-polymeric structures available for cubane/BCP derivatives. These reactions demonstrate considerable substrate scope, from utilization of small phenyl moieties to large porphyrin rings, with varying lengths and different angles. To control conformational flexibility, amide bonds were introduced between the bridgehead carbon of BCP/cubane and the porphyrin rings. Through varying the orientation of the substituents around the amide bond of cubane/BCP, different intermolecular interactions were identified through single crystal X-ray analysis. These studies revealed non-covalent interactions that are the first-of-their-kind including a unique iodine-oxygen interaction between cubane units. These supramolecular architectures indicate the possibility to mimic a protein structure due to the sp3 rigid scaffolds (BCP or cubane) that exhibit the essential conformational space for protein function while simultaneously providing amide bonds for molecular recognition.Entities:
Keywords: bicyclo[1.1.1]pentane; cubane; molecular tweezers; porphyrin arrays; supramolecular chemistry
Year: 2020 PMID: 31697426 PMCID: PMC7064986 DOI: 10.1002/chem.201904199
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
Figure 1Schematic representation of synthesized porphyrin arrays.
Figure 2Schematic representation of potential interactions between amide‐connected BCP/cubane derivatives: (a) H‐bonding interactions; (b) iodine⋅⋅⋅oxygen interactions; (c) intermolecular axial interactions; (d) potential interaction site with external metal ions.
Scheme 1Amide coupling of cubane moieties 1 and 2 with amines 7–12.
Test C−H activation reactions for the amide coupling of 4‐(methoxycarbonyl)cubane‐1‐carboxylic acid (1) with 5‐(4′‐aminophenyl)‐10,15,20‐triphenylporphyrin (7).
|
| |||||
|---|---|---|---|---|---|
|
Cubane [equiv] |
Activating agent [equiv] |
Base |
Sol. |
|
Yield |
|
2.0 |
DIC (1.3) |
DMAP |
THF |
48 |
65 |
|
2.0 |
ECF[a] (1.3) |
NEt3 |
CHCl3 |
120 |
75 |
|
6.0 |
DIC (1.3) |
DMAP |
THF |
48 |
65 |
|
3.0 |
HATU/HOAt (1.3/1.3) |
DIPEA |
DMF |
24 |
25 |
[a] ECF=Ethylchloroformate.
Scheme 2Amide coupling at bridgehead carbon of BCP moiety and substrate scope.
Scheme 3Suzuki [Pd(PPh3)4, K3PO4, DMF ] or Sonogashira coupling (Pd(PPh3)2Cl2, CuI, TEA/THF) reaction conditions and substrate scope.
Figure 3(a) Molecular structure of cubane 13. (b) Molecular arrangement of compound 13 in the crystal shows the non‐covalent interactions between N1⋅⋅⋅O1=C and C=O2⋅⋅⋅I1.
Figure 4(a) Molecular structure of compound 33. (b) Molecular arrangement of compound 33 in the crystal shows the non‐covalent interaction between N1⋅⋅⋅O1.
Figure 5(a) Molecular structure of compound 46. (b) Intermolecular head‐to‐tail interaction between the Zn metal of the porphyrin unit (acceptor) and the C=O donor moiety of the amide bond.
Figure 6(a) Molecular structure of compound 45. (b) Charge separated ion pair complex of porphyrin 45 and [HNEt3]+.