Literature DB >> 31696595

Searching for Small Molecules with an Atomic Sort.

Brendan M Duggan1, Reiko Cullum2, William Fenical2, Luis A Amador3, Abimael D Rodríguez3, James J La Clair4.   

Abstract

The discovery of biologically active small molecules requires sifting through large amounts of data to identify unique or unusual arrangements of atoms. Here, we develop, test and evaluate an atom-based sort to identify novel features of secondary metabolites and demonstrate its use to evaluate novelty in marine microbial and sponge extracts. This study outlines an important ongoing advance towards the translation of autonomous systems to identify, and ultimately elucidate, atomic novelty within a complex mixture of small molecules.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; algorithms; drug discovery; molecular search engine; natural products

Year:  2019        PMID: 31696595      PMCID: PMC6942196          DOI: 10.1002/anie.201911862

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  37 in total

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Authors:  James J La Clair
Journal:  Nat Prod Rep       Date:  2010-04-26       Impact factor: 13.423

Review 2.  Automated structure determination from NMR spectra.

Authors:  Peter Güntert
Journal:  Eur Biophys J       Date:  2008-09-20       Impact factor: 1.733

Review 3.  High-resolution proton-detected NMR of proteins at very fast MAS.

Authors:  Loren B Andreas; Tanguy Le Marchand; Kristaps Jaudzems; Guido Pintacuda
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Review 4.  Genome mining and prospects for antibiotic discovery.

Authors:  Lucy Foulston
Journal:  Curr Opin Microbiol       Date:  2019-02-15       Impact factor: 7.934

Review 5.  Molecular Networking As a Drug Discovery, Drug Metabolism, and Precision Medicine Strategy.

Authors:  Robert A Quinn; Louis-Felix Nothias; Oliver Vining; Michael Meehan; Eduardo Esquenazi; Pieter C Dorrestein
Journal:  Trends Pharmacol Sci       Date:  2016-11-11       Impact factor: 14.819

6.  Application of CRAFT in two-dimensional NMR data processing.

Authors:  Krish Krishnamurthy; Andrea M Sefler; David J Russell
Journal:  Magn Reson Chem       Date:  2016-05-10       Impact factor: 2.447

7.  Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality.

Authors:  Gregory C A Amos; Takayoshi Awakawa; Robert N Tuttle; Anne-Catrin Letzel; Min Cheol Kim; Yuta Kudo; William Fenical; Bradley Moore; Paul R Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

8.  The Face of a Molecule.

Authors:  William H Gerwick
Journal:  J Nat Prod       Date:  2017-09-08       Impact factor: 4.050

Review 9.  Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi.

Authors:  Phuong Nguyen Tran; Ming-Ren Yen; Chen-Yu Chiang; Hsiao-Ching Lin; Pao-Yang Chen
Journal:  Appl Microbiol Biotechnol       Date:  2019-03-12       Impact factor: 4.813

10.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

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  2 in total

1.  A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products.

Authors:  Raphael Reher; Hyun Woo Kim; Chen Zhang; Huanru Henry Mao; Mingxun Wang; Louis-Félix Nothias; Andres Mauricio Caraballo-Rodriguez; Evgenia Glukhov; Bahar Teke; Tiago Leao; Kelsey L Alexander; Brendan M Duggan; Ezra L Van Everbroeck; Pieter C Dorrestein; Garrison W Cottrell; William H Gerwick
Journal:  J Am Chem Soc       Date:  2020-02-21       Impact factor: 15.419

Review 2.  Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches.

Authors:  Mehdi A Beniddir; Kyo Bin Kang; Grégory Genta-Jouve; Florian Huber; Simon Rogers; Justin J J van der Hooft
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

  2 in total

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