Literature DB >> 30776510

Genome mining and prospects for antibiotic discovery.

Lucy Foulston1.   

Abstract

Natural products are a rich source of bioactive compounds that have been used successfully in the areas of human health from infectious disease to cancer; however, traditional fermentation-based screening has provided diminishing returns over the last 20-30 years. Solutions to the unmet need of resistant bacterial infection are critically required. Technological advances in high-throughput genomic sequencing, coupled with ever-decreasing cost, are now presenting a unique opportunity for the reinvigoration of natural product discovery. Bioinformatic methods can predict the propensity of a microbial strain to produce molecules with novel chemical structures that could have new mechanisms of action in bacterial growth inhibition. This review highlights how this potential can be harnessed; with a focus on engineering the expression of silent biosynthetic gene clusters predicted to encode novel antibiotics.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30776510     DOI: 10.1016/j.mib.2019.01.001

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  8 in total

1.  Searching for Small Molecules with an Atomic Sort.

Authors:  Brendan M Duggan; Reiko Cullum; William Fenical; Luis A Amador; Abimael D Rodríguez; James J La Clair
Journal:  Angew Chem Int Ed Engl       Date:  2019-12-02       Impact factor: 15.336

2.  Prospects for Antibacterial Discovery and Development.

Authors:  Thomas M Privalsky; Alexander M Soohoo; Jinhua Wang; Christopher T Walsh; Gerard D Wright; Eric M Gordon; Nathanael S Gray; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2021-12-03       Impact factor: 15.419

3.  Comparative Genomic Insights into Secondary Metabolism Biosynthetic Gene Cluster Distributions of Marine Streptomyces.

Authors:  Lin Xu; Kai-Xiong Ye; Wen-Hua Dai; Cong Sun; Lian-Hua Xu; Bing-Nan Han
Journal:  Mar Drugs       Date:  2019-08-26       Impact factor: 5.118

4.  The Integration of Genome Mining, Comparative Genomics, and Functional Genetics for Biosynthetic Gene Cluster Identification.

Authors:  Ashley N Williams; Naveen Sorout; Alexander J Cameron; John Stavrinides
Journal:  Front Genet       Date:  2020-12-03       Impact factor: 4.599

5.  Complete Genome Sequences of Four Putatively Antibiotic-Producing Bacteria Isolated from Soil in Arkansas, USA.

Authors:  Ruth Plymale; Griffin Hopkins; Taylor Johnson; Taylor Savage; Danielle Schaal
Journal:  Microbiol Resour Announc       Date:  2022-01-06

Review 6.  Antibiotic Discovery and Resistance: The Chase and the Race.

Authors:  Katia Iskandar; Jayaseelan Murugaiyan; Dalal Hammoudi Halat; Said El Hage; Vindana Chibabhai; Saranya Adukkadukkam; Christine Roques; Laurent Molinier; Pascale Salameh; Maarten Van Dongen
Journal:  Antibiotics (Basel)       Date:  2022-01-30

7.  Activation and enhancement of caerulomycin A biosynthesis in marine-derived Actinoalloteichus sp. AHMU CJ021 by combinatorial genome mining strategies.

Authors:  Yunchang Xie; Jiawen Chen; Bo Wang; Tai Chen; Junyu Chen; Yuan Zhang; Xiaoying Liu; Qi Chen
Journal:  Microb Cell Fact       Date:  2020-08-06       Impact factor: 5.328

Review 8.  Genome mining for drug discovery: progress at the front end.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2021-12-23       Impact factor: 4.258

  8 in total

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