Literature DB >> 31689436

Higher-Order Chromosomal Structures Mediate Genome Function.

Ivana Jerković1, Quentin Szabo1, Frédéric Bantignies2, Giacomo Cavalli3.   

Abstract

How chromosomes are organized within the tridimensional space of the nucleus and how can this organization affect genome function have been long-standing questions on the path to understanding genome activity and its link to disease. In the last decade, high-throughput chromosome conformation capture techniques, such as Hi-C, have facilitated the discovery of new principles of genome folding. Chromosomes are folded in multiple high-order structures, with local contacts between enhancers and promoters, intermediate-level contacts forming Topologically Associating Domains (TADs) and higher-order chromatin structures sequestering chromatin into active and repressive compartments. However, despite the increasing evidence that genome organization can influence its function, we are still far from understanding the underlying mechanisms. Deciphering these mechanisms represents a major challenge for the future, which large, international initiatives, such as 4DN, HCA and LifeTime, aim to collaboratively tackle by using a conjunction of state-of-the-art population-based and single-cell approaches.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Chromatin structure; Compartments; Genome folding; Topologically Associating Domains; Transcriptional regulation

Mesh:

Substances:

Year:  2019        PMID: 31689436     DOI: 10.1016/j.jmb.2019.10.014

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

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Review 2.  Understanding 3D genome organization by multidisciplinary methods.

Authors:  Ivana Jerkovic; Giacomo Cavalli
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3.  Polymer Modeling of 3D Epigenome Folding: Application to Drosophila.

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Journal:  Methods Mol Biol       Date:  2022

4.  NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization.

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5.  Differential condensation of sister chromatids acts with Cdc6 to ensure asynchronous S-phase entry in Drosophila male germline stem cell lineage.

Authors:  Rajesh Ranjan; Jonathan Snedeker; Matthew Wooten; Carolina Chu; Sabrina Bracero; Taylar Mouton; Xin Chen
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6.  Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer.

Authors:  Olga V Anatskaya; Alexander E Vinogradov; Ninel M Vainshelbaum; Alessandro Giuliani; Jekaterina Erenpreisa
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Review 7.  SUMO and Transcriptional Regulation: The Lessons of Large-Scale Proteomic, Modifomic and Genomic Studies.

Authors:  Mathias Boulanger; Mehuli Chakraborty; Denis Tempé; Marc Piechaczyk; Guillaume Bossis
Journal:  Molecules       Date:  2021-02-05       Impact factor: 4.411

8.  GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data.

Authors:  Edoardo Giacopuzzi; Niko Popitsch; Jenny C Taylor
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

Review 9.  Single-Molecule/Cell Analyses Reveal Principles of Genome-Folding Mechanisms in the Three Domains of Life.

Authors:  Hugo Maruyama; Takayuki Nambu; Chiho Mashimo; Toshinori Okinaga; Kunio Takeyasu
Journal:  Int J Mol Sci       Date:  2021-12-14       Impact factor: 5.923

  9 in total

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