Literature DB >> 31685548

An RB-Condensin II Complex Mediates Long-Range Chromosome Interactions and Influences Expression at Divergently Paired Genes.

Aren E Marshall1,2, Charles A Ishak1,2, Frederick A Dick3,2,4,5.   

Abstract

Interphase chromosomes are organized into topologically associated domains in order to establish and maintain integrity of transcriptional programs that remain poorly understood. Here, we show that condensin II and TFIIIC are recruited to bidirectionally transcribed promoters by a mechanism that is dependent on the retinoblastoma (RB) protein. Long-range chromosome contacts are disrupted by loss of condensin II loading, which leads to altered expression at bidirectional gene pairs. This study demonstrates that mammalian condensin II functions to organize long-range chromosome contacts and regulate transcription at specific genes. In addition, RB dependence of condensin II suggests that widespread misregulation of chromosome contacts and transcriptional alterations are a consequence of RB mutation.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  TFIIIC; chromosome architecture; chromosome organization; condensin II; epigenetics; gene expression; regulation of gene expression; retinoblastoma protein

Mesh:

Substances:

Year:  2020        PMID: 31685548      PMCID: PMC6944469          DOI: 10.1128/MCB.00452-19

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  70 in total

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Authors:  Hyunjin Shin; Tao Liu; Arjun K Manrai; X Shirley Liu
Journal:  Bioinformatics       Date:  2009-08-18       Impact factor: 6.937

2.  RNA polymerase III transcription repressed by Rb through its interactions with TFIIIB and TFIIIC2.

Authors:  W M Chu; Z Wang; R G Roeder; C W Schmid
Journal:  J Biol Chem       Date:  1997-06-06       Impact factor: 5.157

3.  w4CSeq: software and web application to analyze 4C-seq data.

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Journal:  Bioinformatics       Date:  2016-07-04       Impact factor: 6.937

4.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

5.  The demethylase JMJD2C localizes to H3K4me3-positive transcription start sites and is dispensable for embryonic development.

Authors:  Marianne Terndrup Pedersen; Karl Agger; Anne Laugesen; Jens V Johansen; Paul A C Cloos; Jesper Christensen; Kristian Helin
Journal:  Mol Cell Biol       Date:  2014-01-06       Impact factor: 4.272

6.  The retinoblastoma protein regulates pericentric heterochromatin.

Authors:  Christian E Isaac; Sarah M Francis; Alison L Martens; Lisa M Julian; Laurie A Seifried; Natalie Erdmann; Ulrich K Binné; Lea Harrington; Piotr Sicinski; Nathalie G Bérubé; Nicholas J Dyson; Frederick A Dick
Journal:  Mol Cell Biol       Date:  2006-05       Impact factor: 4.272

7.  RBF1 promotes chromatin condensation through a conserved interaction with the Condensin II protein dCAP-D3.

Authors:  Michelle S Longworth; Anabel Herr; Jun-Yuan Ji; Nicholas J Dyson
Journal:  Genes Dev       Date:  2008-03-26       Impact factor: 11.361

8.  A pathway for mitotic chromosome formation.

Authors:  Johan H Gibcus; Kumiko Samejima; Anton Goloborodko; Itaru Samejima; Natalia Naumova; Johannes Nuebler; Masato T Kanemaki; Linfeng Xie; James R Paulson; William C Earnshaw; Leonid A Mirny; Job Dekker
Journal:  Science       Date:  2018-01-18       Impact factor: 47.728

Review 9.  An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Authors:  James Fraser; Iain Williamson; Wendy A Bickmore; Josée Dostie
Journal:  Microbiol Mol Biol Rev       Date:  2015-09       Impact factor: 11.056

10.  Analysis of cell cycle position in mammalian cells.

Authors:  Matthew J Cecchini; Mehdi Amiri; Frederick A Dick
Journal:  J Vis Exp       Date:  2012-01-21       Impact factor: 1.355

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  3 in total

1.  Active RB causes visible changes in nuclear organization.

Authors:  Badri Krishnan; Takaaki Yasuhara; Purva Rumde; Marcello Stanzione; Chenyue Lu; Hanjun Lee; Michael S Lawrence; Lee Zou; Linda T Nieman; Ioannis Sanidas; Nicholas J Dyson
Journal:  J Cell Biol       Date:  2022-01-12       Impact factor: 10.539

2.  Retinoblastoma protein regulates carcinogen susceptibility at heterochromatic cancer driver loci.

Authors:  Ka Man Wong; Devin A King; Erin K Schwartz; Rafael E Herrera; Ashby J Morrison
Journal:  Life Sci Alliance       Date:  2022-01-04

Review 3.  Condensin complexes: understanding loop extrusion one conformational change at a time.

Authors:  Erin E Cutts; Alessandro Vannini
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

  3 in total

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