| Literature DB >> 31683632 |
Amy J Davis1, Kathleen M Nelson2, Jordona D Kirby3, Ryan Wallace4, Xiaoyue Ma5, Kim M Pepin6, Richard B Chipman7, Amy T Gilbert8.
Abstract
Intensive efforts are being made to eliminate the raccoon variant of rabies virus (RABV) from the eastern United States and Canada. The United States Department of Agriculture (USDA) Wildlife Services National Rabies Management Program has implemented enhanced rabies surveillance (ERS) to improve case detection across the extent of the raccoon oral rabies vaccination (ORV) management area. We evaluated ERS and public health surveillance data from 2006 to 2017 in three northeastern USA states using a dynamic occupancy modeling approach. Our objectives were to examine potential risk corridors for RABV incursion from the U.S. into Canada, evaluate the effectiveness of ORV management strategies, and identify surveillance gaps. ORV management has resulted in a decrease in RABV cases over time within vaccination zones (from occupancy ( ψ ¯ ) of 0.60 standard error (SE) = 0.03 in the spring of 2006 to ψ ¯ of 0.33 SE = 0.10 in the spring 2017). RABV cases also reduced in the enzootic area (from ψ ¯ of 0.60 SE = 0.03 in the spring of 2006 to ψ ¯ of 0.45 SE = 0.05 in the spring 2017). Although RABV occurrence was related to habitat type, greater impacts were associated with ORV and trap-vaccinate-release (TVR) campaigns, in addition to seasonal and yearly trends. Reductions in RABV occupancy were more pronounced in areas treated with Ontario Rabies Vaccine Bait (ONRAB) compared to RABORAL V-RG®. Our approach tracked changes in RABV occurrence across space and time, identified risk corridors for potential incursions into Canada, and highlighted surveillance gaps, while evaluating the impacts of management actions. Using this approach, we are able to provide guidance for future RABV management.Entities:
Keywords: ORV; USA; dynamic occupancy; multi-method occupancy; rabies virus; raccoon; surveillance; wildlife disease
Mesh:
Substances:
Year: 2019 PMID: 31683632 PMCID: PMC6893774 DOI: 10.3390/v11111006
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Figure 1Map of the study area in northern New York, Vermont and New Hampshire. Locations of raccoons that were sampled from 2006 to 2017 are shown—the black circles were negative for raccoon variant of rabies virus (RABV) and the red triangles were positive for RABV. The oral rabies vaccination (ORV) zone for 2017 is shown as the light grey area.
Figure 2The Probability of RABV occupancy from 2006 to 2017 in the northern counties of New York, Vermont and New Hampshire. The estimates are shown by season and by status of areas within the ORV management zone (red) and those south of the ORV management zone in the enzootic area (black). The shaded regions by color show the 95% confidence intervals.
Covariate estimates for the beta regression model on RABV occupancy. Factors are sorted in descending order from the absolute magnitude of the effect. The duration of baiting by V-RG and Ontario Rabies Vaccine Bait (ONRAB) were modeled with basis functions (BS) to allow for non-linear effects. Their factors are grouped together and sorted based on the largest magnitude effect.
| Factor | Estimate | Std. Error | z Value | Pr(>|z|) |
|---|---|---|---|---|
| (Intercept) | 1.15 | 0.02 | 57.13 | 0.00 |
| Bait density by bait type interaction | 1.28 | 0.07 | 18.43 | 0.00 |
| Bait density | −1.18 | 0.06 | −20.46 | 0.00 |
| Year | −0.79 | 0.01 | −63.25 | 0.00 |
| Medium to high development | 0.62 | 0.25 | 2.52 | 0.01 |
| ONRAB duration BS-1 | −0.08 | 0.11 | −0.73 | 0.46 |
| ONRAB duration BS-2 | −0.13 | 0.04 | −3.36 | 0.00 |
| ONRAB duration BS-3 | −0.43 | 0.05 | −8.00 | 0.00 |
| Open to low development | −0.41 | 0.16 | −2.61 | 0.01 |
| Bait type | −0.41 | 0.05 | −8.32 | 0.00 |
| V-RG duration BS-1 | 0.20 | 0.05 | 3.86 | 0.00 |
| V-RG duration BS-2 | 0.32 | 0.05 | 5.93 | 0.00 |
| V-RG duration BS-3 | −0.40 | 0.06 | −6.37 | 0.00 |
| Deciduous forest | −0.36 | 0.02 | −17.05 | 0.02 |
| Spring | −0.34 | 0.01 | −45.09 | 0.00 |
| Summer | −0.29 | 0.01 | −37.89 | 0.00 |
| Hay/pasture | 0.26 | 0.04 | 6.61 | 0.00 |
| log(# raccoons vaccinated with trap–vaccinate–release management) | −0.25 | 0.00 | −69.24 | 0.00 |
| Cultivated crops | 0.15 | 0.07 | 2.33 | 0.02 |
| Wetlands | 0.14 | 0.04 | 3.39 | 0.00 |
| Winter | −0.13 | 0.01 | −16.53 | 0.00 |
| Years of total baiting | −0.08 | 0.02 | −3.98 | 0.00 |
| Mean elevation | −0.08 | 0.01 | −8.30 | 0.00 |
| Evergreen forest | 0.06 | 0.04 | 1.79 | 0.07 |
Figure 3Boxplots of the probability of RABV occupancy estimates by bait density and bait type.
Figure 4(a) The probability of RABV occupancy surface within the study area in the fall of 2017. The inset in this figure shows the county boundaries and the ORV boundaries for 2017 (light grey). (b) The standard error around RABV occupancy estimates by grid cell for the fall of 2017.
Number of negative and positive RABV samples and total raccoon samples from 2006 to 2017 in northeastern U.S. by the surveillance method.
| Fall to Winter | Spring to Summer | |||||
|---|---|---|---|---|---|---|
| Method | Negative | Positive | Total | Negative | Positive | Total |
| Strange acting | 99 | 12 | 111 | 388 | 50 | 438 |
| Found dead | 13 | 0 | 13 | 36 | 11 | 47 |
| Roadkill | 138 | 12 | 150 | 517 | 30 | 547 |
| Surveillance trapped | 70 | 1 | 71 | 608 | 9 | 617 |
| Nuisance | 25 | 2 | 27 | 251 | 2 | 253 |
| Other | 147 | 13 | 160 | 265 | 60 | 325 |
| Public health | 229 | 104 | 333 | 695 | 197 | 892 |
Figure 5The probability of RABV detection by the surveillance method allowing for within year variability (spring to summer—solid colors; fall to winter—hashed bars). The colors correspond to surveillance method: strange acting in red, found dead in orange, roadkill in light green, surveillance trapped method in dark green, nuisance samples in yellow, other samples in violet, and public health samples in blue. The 95% credible intervals are shown per estimate.