Literature DB >> 31679841

Bacterial RNA Degradosomes: Molecular Machines under Tight Control.

Alejandro Tejada-Arranz1, Valérie de Crécy-Lagard2, Hilde de Reuse3.   

Abstract

Bacterial RNA degradosomes are multienzyme molecular machines that act as hubs for post-transcriptional regulation of gene expression. The ribonuclease activities of these complexes require tight regulation, as they are usually essential for cell survival while potentially destructive. Recent studies have unveiled a wide variety of regulatory mechanisms including autoregulation, post-translational modifications, and protein compartmentalization. Recently, the subcellular organization of bacterial RNA degradosomes was found to present similarities with eukaryotic messenger ribonucleoprotein (mRNP) granules, membraneless compartments that are also involved in mRNA and protein storage and/or mRNA degradation. In this review, we present the current knowledge on the composition and targets of RNA degradosomes, the most recent developments regarding the regulation of these machineries, and their similarities with the eukaryotic mRNP granules.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA degradation; RNA degradosome; RNA maturation; compartmentalization; mRNP granules; membraneless organelles; post-transcriptional regulation

Mesh:

Substances:

Year:  2019        PMID: 31679841      PMCID: PMC6958999          DOI: 10.1016/j.tibs.2019.10.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  101 in total

1.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

2.  Polyphosphate kinase is a component of the Escherichia coli RNA degradosome.

Authors:  E Blum; B Py; A J Carpousis; C F Higgins
Journal:  Mol Microbiol       Date:  1997-10       Impact factor: 3.501

3.  Rapid Degradation of Host mRNAs by Stimulation of RNase E Activity by Srd of Bacteriophage T4.

Authors:  Dan Qi; Abdulraheem M Alawneh; Tetsuro Yonesaki; Yuichi Otsuka
Journal:  Genetics       Date:  2015-08-31       Impact factor: 4.562

4.  RNase E in the γ-Proteobacteria: conservation of intrinsically disordered noncatalytic region and molecular evolution of microdomains.

Authors:  Soraya Aït-Bara; Agamemnon J Carpousis; Yves Quentin
Journal:  Mol Genet Genomics       Date:  2014-11-29       Impact factor: 3.291

5.  Molecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosome.

Authors:  Jarrod E Voss; Ben F Luisi; Steven W Hardwick
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

6.  Twenty years of bacterial RNases and RNA processing: how we've matured.

Authors:  Murray P Deutscher
Journal:  RNA       Date:  2015-04       Impact factor: 4.942

7.  Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

Authors:  Shafagh A Waters; Sean P McAteer; Grzegorz Kudla; Ignatius Pang; Nandan P Deshpande; Timothy G Amos; Kai Wen Leong; Marc R Wilkins; Richard Strugnell; David L Gally; David Tollervey; Jai J Tree
Journal:  EMBO J       Date:  2016-11-11       Impact factor: 11.598

8.  In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Authors:  Yanjie Chao; Lei Li; Dylan Girodat; Konrad U Förstner; Nelly Said; Colin Corcoran; Michał Śmiga; Kai Papenfort; Richard Reinhardt; Hans-Joachim Wieden; Ben F Luisi; Jörg Vogel
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

9.  Association of the Cold Shock DEAD-Box RNA Helicase RhlE to the RNA Degradosome in Caulobacter crescentus.

Authors:  Angel A Aguirre; Alexandre M Vicente; Steven W Hardwick; Daniela M Alvelos; Ricardo R Mazzon; Ben F Luisi; Marilis V Marques
Journal:  J Bacteriol       Date:  2017-06-13       Impact factor: 3.490

10.  A minimal bacterial RNase J-based degradosome is associated with translating ribosomes.

Authors:  Yulia Redko; Sylvie Aubert; Anna Stachowicz; Pascal Lenormand; Abdelkader Namane; Fabien Darfeuille; Marie Thibonnier; Hilde De Reuse
Journal:  Nucleic Acids Res       Date:  2012-10-22       Impact factor: 16.971

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  15 in total

Review 1.  Phase-separated bacterial ribonucleoprotein bodies organize mRNA decay.

Authors:  Nisansala S Muthunayake; Dylan T Tomares; W Seth Childers; Jared M Schrader
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-23       Impact factor: 9.957

Review 2.  Synthetic Biological Circuits within an Orthogonal Central Dogma.

Authors:  Alan Costello; Ahmed H Badran
Journal:  Trends Biotechnol       Date:  2020-06-22       Impact factor: 19.536

3.  Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.

Authors:  Federico Cerullo; Sebastian Filbeck; Pratik Rajendra Patil; Hao-Chih Hung; Haifei Xu; Julia Vornberger; Florian W Hofer; Jaro Schmitt; Guenter Kramer; Bernd Bukau; Kay Hofmann; Stefan Pfeffer; Claudio A P Joazeiro
Journal:  Nature       Date:  2022-03-09       Impact factor: 69.504

4.  Multi-scale ensemble properties of the Escherichia coli RNA degradosome.

Authors:  Tom Dendooven; Giulia Paris; Alexander V Shkumatov; Md Saiful Islam; Alister Burt; Marta A Kubańska; Tai Yuchen Yang; Steven W Hardwick; Ben F Luisi
Journal:  Mol Microbiol       Date:  2021-09-25       Impact factor: 3.979

5.  Quantitative Control for Stoichiometric Protein Synthesis.

Authors:  James C Taggart; Jean-Benoît Lalanne; Gene-Wei Li
Journal:  Annu Rev Microbiol       Date:  2021-08-03       Impact factor: 16.232

6.  Antibacterial activity of ethoxzolamide against Helicobacter pylori strains SS1 and 26695.

Authors:  Mohammad M Rahman; Alexandra Tikhomirova; Joyanta K Modak; Melanie L Hutton; Claudiu T Supuran; Anna Roujeinikova
Journal:  Gut Pathog       Date:  2020-04-15       Impact factor: 4.181

7.  Staphylococcus aureus RnpA Inhibitors: Computational-Guided Design, Synthesis and Initial Biological Evaluation.

Authors:  Lorenzo Suigo; Michaelle Chojnacki; Carlo Zanotto; Victor Sebastián-Pérez; Carlo De Giuli Morghen; Andrea Casiraghi; Paul M Dunman; Ermanno Valoti; Valentina Straniero
Journal:  Antibiotics (Basel)       Date:  2021-04-14

Review 8.  Activity and Function in Human Cells of the Evolutionary Conserved Exonuclease Polynucleotide Phosphorylase.

Authors:  Federica A Falchi; Roberto Pizzoccheri; Federica Briani
Journal:  Int J Mol Sci       Date:  2022-01-31       Impact factor: 5.923

9.  A fluorescence-based genetic screen reveals diverse mechanisms silencing small RNA signaling in E. coli.

Authors:  Jiandong Chen; Leann To; Francois de Mets; Xing Luo; Nadim Majdalani; Chin-Hsien Tai; Susan Gottesman
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 11.205

10.  The RNase J-Based RNA Degradosome Is Compartmentalized in the Gastric Pathogen Helicobacter pylori.

Authors:  Alejandro Tejada-Arranz; Eloïse Galtier; Lamya El Mortaji; Evelyne Turlin; Dmitry Ershov; Hilde De Reuse
Journal:  mBio       Date:  2020-09-15       Impact factor: 7.867

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