Literature DB >> 31677972

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.

Daniel J B Clarke1, Lily Wang1, Alex Jones2, Megan L Wojciechowicz1, Denis Torre1, Kathleen M Jagodnik1, Sherry L Jenkins1, Peter McQuilton3, Zachary Flamholz1, Moshe C Silverstein1, Brian M Schilder1, Kimberly Robasky4, Claris Castillo4, Ray Idaszak4, Stanley C Ahalt4, Jason Williams5, Stephan Schurer6, Daniel J Cooper6, Ricardo de Miranda Azevedo7, Juergen A Klenk2, Melissa A Haendel8, Jared Nedzel9, Paul Avillach10, Mary E Shimoyama11, Rayna M Harris12, Meredith Gamble13, Rudy Poten13, Amanda L Charbonneau12, Jennie Larkin14, C Titus Brown12, Vivien R Bonazzi15, Michel J Dumontier7, Susanna-Assunta Sansone3, Avi Ma'ayan16.   

Abstract

As more digital resources are produced by the research community, it is becoming increasingly important to harmonize and organize them for synergistic utilization. The findable, accessible, interoperable, and reusable (FAIR) guiding principles have prompted many stakeholders to consider strategies for tackling this challenge. The FAIRshake toolkit was developed to enable the establishment of community-driven FAIR metrics and rubrics paired with manual and automated FAIR assessments. FAIR assessments are visualized as an insignia that can be embedded within digital-resources-hosting websites. Using FAIRshake, a variety of biomedical digital resources were manually and automatically evaluated for their level of FAIRness.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2019        PMID: 31677972      PMCID: PMC7316196          DOI: 10.1016/j.cels.2019.09.011

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  5 in total

1.  Implementation and relevance of FAIR data principles in biopharmaceutical R&D.

Authors:  John Wise; Alexandra Grebe de Barron; Andrea Splendiani; Beeta Balali-Mood; Drashtti Vasant; Eric Little; Gaspare Mellino; Ian Harrow; Ian Smith; Jan Taubert; Kees van Bochove; Martin Romacker; Peter Walgemoed; Rafael C Jimenez; Rainer Winnenburg; Tom Plasterer; Vibhor Gupta; Victoria Hedley
Journal:  Drug Discov Today       Date:  2019-01-25       Impact factor: 7.851

2.  A design framework and exemplar metrics for FAIRness.

Authors:  Mark D Wilkinson; Susanna-Assunta Sansone; Erik Schultes; Peter Doorn; Luiz Olavo Bonino da Silva Santos; Michel Dumontier
Journal:  Sci Data       Date:  2018-06-26       Impact factor: 6.444

3.  FAIRsharing as a community approach to standards, repositories and policies.

Authors:  Susanna-Assunta Sansone; Peter McQuilton; Philippe Rocca-Serra; Alejandra Gonzalez-Beltran; Massimiliano Izzo; Allyson L Lister; Milo Thurston
Journal:  Nat Biotechnol       Date:  2019-04       Impact factor: 54.908

4.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

5.  Evaluating FAIR maturity through a scalable, automated, community-governed framework.

Authors:  Mark D Wilkinson; Michel Dumontier; Susanna-Assunta Sansone; Luiz Olavo Bonino da Silva Santos; Mario Prieto; Dominique Batista; Peter McQuilton; Tobias Kuhn; Philippe Rocca-Serra; Mercѐ Crosas; Erik Schultes
Journal:  Sci Data       Date:  2019-09-20       Impact factor: 6.444

  5 in total
  6 in total

1.  Guidelines for standardizing T-cell cytometry assays to link biomarkers, mechanisms, and disease outcomes in type 1 diabetes.

Authors:  Jennie H M Yang; Kirsten A Ward-Hartstonge; Daniel J Perry; J Lori Blanchfield; Amanda L Posgai; Alice E Wiedeman; Kirsten Diggins; Adeeb Rahman; Timothy I M Tree; Todd M Brusko; Megan K Levings; Eddie A James; Sally C Kent; Cate Speake; Dirk Homann; S Alice Long
Journal:  Eur J Immunol       Date:  2022-01-28       Impact factor: 5.532

2.  A Second Look at FAIR in Proteomic Investigations.

Authors:  J Harry Caufield; John Fu; Ding Wang; Vladimir Guevara-Gonzalez; Wei Wang; Peipei Ping
Journal:  J Proteome Res       Date:  2021-03-13       Impact factor: 4.466

3.  SigCom LINCS: data and metadata search engine for a million gene expression signatures.

Authors:  John Erol Evangelista; Daniel J B Clarke; Zhuorui Xie; Alexander Lachmann; Minji Jeon; Kerwin Chen; Kathleen M Jagodnik; Sherry L Jenkins; Maxim V Kuleshov; Megan L Wojciechowicz; Stephan C Schürer; Mario Medvedovic; Avi Ma'ayan
Journal:  Nucleic Acids Res       Date:  2022-05-07       Impact factor: 19.160

4.  Findability of UK health datasets available for research: a mixed methods study.

Authors:  Emily Griffiths; Rebecca M Joseph; George Tilston; Sarah Thew; Zoher Kapacee; William Dixon; Niels Peek
Journal:  BMJ Health Care Inform       Date:  2022-02

5.  KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.

Authors:  Hugo Mochão; Pedro Barahona; Rafael S Costa
Journal:  Database (Oxford)       Date:  2020-11-28       Impact factor: 3.451

6.  Current state and call for action to accomplish findability, accessibility, interoperability, and reusability of low carbon energy data.

Authors:  Valeria Jana Schwanitz; August Wierling; Mehmet Efe Biresselioglu; Massimo Celino; Muhittin Hakan Demir; Maria Bałazińska; Mariusz Kruczek; Manfred Paier; Demet Suna
Journal:  Sci Rep       Date:  2022-03-25       Impact factor: 4.379

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.