Literature DB >> 31676864

A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits.

Guangwei Zhao1, Qun Lian2, Zhonghua Zhang3,4, Qiushi Fu3, Yuhua He1, Shuangwu Ma1, Valentino Ruggieri5,6, Antonio J Monforte7, Pingyong Wang1, Irene Julca8,9,10, Huaisong Wang3, Junpu Liu1, Yong Xu11, Runze Wang12, Jiabing Ji2, Zhihong Xu1, Weihu Kong1, Yang Zhong2, Jianli Shang1, Lara Pereira5,6, Jason Argyris5,6, Jian Zhang1, Carlos Mayobre5,6, Marta Pujol5,6, Elad Oren13, Diandian Ou1, Jiming Wang1, Dexi Sun1, Shengjie Zhao1, Yingchun Zhu1, Na Li1, Nurit Katzir13, Amit Gur13, Catherine Dogimont14, Hanno Schaefer15, Wei Fan2, Abdelhafid Bendahmane14, Zhangjun Fei16,17, Michel Pitrat14, Toni Gabaldón9,10,18, Tao Lin2,19, Jordi Garcia-Mas20,21, Yongyang Xu22, Sanwen Huang23.   

Abstract

Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. Our results suggest that three independent domestication events occurred in melon, two in India and one in Africa. We detected two independent sets of domestication sweeps, resulting in diverse characteristics of the two subspecies melo and agrestis during melon breeding. Genome-wide association studies for 16 agronomic traits identified 208 loci significantly associated with fruit mass, quality and morphological characters. This study sheds light on the domestication history of melon and provides a valuable resource for genomics-assisted breeding of this important crop.

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Year:  2019        PMID: 31676864     DOI: 10.1038/s41588-019-0522-8

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  54 in total

1.  The genome of melon (Cucumis melo L.).

Authors:  Jordi Garcia-Mas; Andrej Benjak; Walter Sanseverino; Michael Bourgeois; Gisela Mir; Víctor M González; Elizabeth Hénaff; Francisco Câmara; Luca Cozzuto; Ernesto Lowy; Tyler Alioto; Salvador Capella-Gutiérrez; Jose Blanca; Joaquín Cañizares; Pello Ziarsolo; Daniel Gonzalez-Ibeas; Luis Rodríguez-Moreno; Marcus Droege; Lei Du; Miguel Alvarez-Tejado; Belen Lorente-Galdos; Marta Melé; Luming Yang; Yiqun Weng; Arcadi Navarro; Tomas Marques-Bonet; Miguel A Aranda; Fernando Nuez; Belén Picó; Toni Gabaldón; Guglielmo Roma; Roderic Guigó; Josep M Casacuberta; Pere Arús; Pere Puigdomènech
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

2.  Genome-wide association studies of 14 agronomic traits in rice landraces.

Authors:  Xuehui Huang; Xinghua Wei; Tao Sang; Qiang Zhao; Qi Feng; Yan Zhao; Canyang Li; Chuanrang Zhu; Tingting Lu; Zhiwu Zhang; Meng Li; Danlin Fan; Yunli Guo; Ahong Wang; Lu Wang; Liuwei Deng; Wenjun Li; Yiqi Lu; Qijun Weng; Kunyan Liu; Tao Huang; Taoying Zhou; Yufeng Jing; Wei Li; Zhang Lin; Edward S Buckler; Qian Qian; Qi-Fa Zhang; Jiayang Li; Bin Han
Journal:  Nat Genet       Date:  2010-10-24       Impact factor: 38.330

3.  Genome-wide association study of leaf architecture in the maize nested association mapping population.

Authors:  Feng Tian; Peter J Bradbury; Patrick J Brown; Hsiaoyi Hung; Qi Sun; Sherry Flint-Garcia; Torbert R Rocheford; Michael D McMullen; James B Holland; Edward S Buckler
Journal:  Nat Genet       Date:  2011-01-09       Impact factor: 38.330

4.  Medieval emergence of sweet melons, Cucumis melo (Cucurbitaceae).

Authors:  Harry S Paris; Zohar Amar; Efraim Lev
Journal:  Ann Bot       Date:  2012-05-30       Impact factor: 4.357

5.  A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons.

Authors:  Adnane Boualem; Mohamed Fergany; Ronan Fernandez; Christelle Troadec; Antoine Martin; Halima Morin; Marie-Agnes Sari; Fabrice Collin; Jonathan M Flowers; Michel Pitrat; Michael D Purugganan; Catherine Dogimont; Abdelhafid Bendahmane
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

6.  A 'golden' SNP in CmOr governs the fruit flesh color of melon (Cucumis melo).

Authors:  Galil Tzuri; Xiangjun Zhou; Noam Chayut; Hui Yuan; Vitaly Portnoy; Ayala Meir; Uzi Sa'ar; Fabian Baumkoler; Michael Mazourek; Efraim Lewinsohn; Zhangjun Fei; Arthur A Schaffer; Li Li; Joseph Burger; Nurit Katzir; Yaakov Tadmor
Journal:  Plant J       Date:  2015-04       Impact factor: 6.417

7.  A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon.

Authors:  Ari Feder; Joseph Burger; Shan Gao; Efraim Lewinsohn; Nurit Katzir; Arthur A Schaffer; Ayala Meir; Rachel Davidovich-Rikanati; Vitaly Portnoy; Amit Gal-On; Zhangjun Fei; Yechezkel Kashi; Yaakov Tadmor
Journal:  Plant Physiol       Date:  2015-09-10       Impact factor: 8.340

8.  A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).

Authors:  Guanqing Jia; Xuehui Huang; Hui Zhi; Yan Zhao; Qiang Zhao; Wenjun Li; Yang Chai; Lifang Yang; Kunyan Liu; Hengyun Lu; Chuanrang Zhu; Yiqi Lu; Congcong Zhou; Danlin Fan; Qijun Weng; Yunli Guo; Tao Huang; Lei Zhang; Tingting Lu; Qi Feng; Hangfei Hao; Hongkuan Liu; Ping Lu; Ning Zhang; Yuhui Li; Erhu Guo; Shujun Wang; Suying Wang; Jinrong Liu; Wenfei Zhang; Guoqiu Chen; Baojin Zhang; Wei Li; Yongfang Wang; Haiquan Li; Baohua Zhao; Jiayang Li; Xianmin Diao; Bin Han
Journal:  Nat Genet       Date:  2013-06-23       Impact factor: 38.330

9.  Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia.

Authors:  Patrizia Sebastian; Hanno Schaefer; Ian R H Telford; Susanne S Renner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-23       Impact factor: 11.205

10.  Repeated domestication of melon (Cucumis melo) in Africa and Asia and a new close relative from India.

Authors:  Josef Endl; Enoch G Achigan-Dako; Arun K Pandey; Antonio J Monforte; Belén Pico; Hanno Schaefer
Journal:  Am J Bot       Date:  2018-10-09       Impact factor: 3.844

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  34 in total

Review 1.  Genetic Resources and Vulnerabilities of Major Cucurbit Crops.

Authors:  Rebecca Grumet; James D McCreight; Cecilia McGregor; Yiqun Weng; Michael Mazourek; Kathleen Reitsma; Joanne Labate; Angela Davis; Zhangjun Fei
Journal:  Genes (Basel)       Date:  2021-08-07       Impact factor: 4.096

2.  Melon shoot organization 1, encoding an AGRONAUTE7 protein, plays a crucial role in plant development.

Authors:  Jian Ma; Congcong Li; Peng Gao; Yanhong Qiu; Mei Zong; Huijun Zhang; Jianshe Wang
Journal:  Theor Appl Genet       Date:  2022-07-08       Impact factor: 5.574

3.  Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication.

Authors:  Hideo Matsumura; Min-Chien Hsiao; Ya-Ping Lin; Atsushi Toyoda; Naoki Taniai; Kazuhiko Tarora; Naoya Urasaki; Shashi S Anand; Narinder P S Dhillon; Roland Schafleitner; Cheng-Ruei Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

4.  The genomic basis of geographic differentiation and fiber improvement in cultivated cotton.

Authors:  Shoupu He; Gaofei Sun; Xiaoli Geng; Wenfang Gong; Panhong Dai; Yinhua Jia; Weijun Shi; Zhaoe Pan; Junduo Wang; Liyuan Wang; Songhua Xiao; Baojun Chen; Shufang Cui; Chunyuan You; Zongming Xie; Feng Wang; Jie Sun; Guoyong Fu; Zhen Peng; Daowu Hu; Liru Wang; Baoyin Pang; Xiongming Du
Journal:  Nat Genet       Date:  2021-04-15       Impact factor: 38.330

5.  A novel introgression line collection to unravel the genetics of climacteric ripening and fruit quality in melon.

Authors:  Lara Pereira; Miguel Santo Domingo; Jason Argyris; Carlos Mayobre; Laura Valverde; Ana Montserrat Martín-Hernández; Marta Pujol; Jordi Garcia-Mas
Journal:  Sci Rep       Date:  2021-05-31       Impact factor: 4.379

6.  Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype.

Authors:  Clement Pichot; Anis Djari; Joseph Tran; Marion Verdenaud; William Marande; Cecile Huneau; Veronique Gautier; David Latrasse; Sandrine Arribat; Vivien Sommard; Christelle Troadec; Charles Poncet; Mohammed Bendahmane; Judit Szecsi; Catherine Dogimont; Jerome Salse; Moussa Benhamed; Mohamed Zouine; Adnane Boualem; Abdelhafid Bendahmane
Journal:  iScience       Date:  2021-12-25

7.  Identification of Candidate Chromosome Region Related to Melon (Cucumis melo L.) Fruit Surface Groove Trait Through Biparental Genetic Mapping and Genome-Wide Association Study.

Authors:  Xin Du; Hongyu Liu; Zicheng Zhu; Shusen Liu; Zhengfeng Song; Lianqin Xia; Jingchao Zhao; Feishi Luan; Shi Liu
Journal:  Front Plant Sci       Date:  2022-04-05       Impact factor: 5.753

8.  A candidate PpRPH gene of the D locus controlling fruit acidity in peach.

Authors:  Lu Wang; Xiaohan Jiang; Li Zhao; Furong Wang; Yudi Liu; Hui Zhou; Huaping He; Yuepeng Han
Journal:  Plant Mol Biol       Date:  2020-10-31       Impact factor: 4.076

9.  Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor.

Authors:  Yang Yu; Jiantao Guan; Yaoguang Xu; Fei Ren; Zhengquan Zhang; Juan Yan; Jun Fu; Jiying Guo; Zhijun Shen; Jianbo Zhao; Quan Jiang; Jianhua Wei; Hua Xie
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

10.  Genome-Wide SNP Markers for Genotypic and Phenotypic Differentiation of Melon (Cucumis melo L.) Varieties Using Genotyping-by-Sequencing.

Authors:  Do Yoon Hyun; Raveendar Sebastin; Gi-An Lee; Kyung Jun Lee; Seong-Hoon Kim; Eunae Yoo; Sookyeong Lee; Man-Jung Kang; Seung Bum Lee; Ik Jang; Na-Young Ro; Gyu-Taek Cho
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

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