Literature DB >> 31676482

Predatory Organisms with Untapped Biosynthetic Potential: Descriptions of Novel Corallococcus Species C. aberystwythensis sp. nov., C. carmarthensis sp. nov., C. exercitus sp. nov., C. interemptor sp. nov., C. llansteffanensis sp. nov., C. praedator sp. nov., C. sicarius sp. nov., and C. terminator sp. nov.

Paul G Livingstone1,2, Oliver Ingleby1, Susan Girdwood1, Alan R Cookson1, Russell M Morphew1, David E Whitworth3.   

Abstract

Corallococcus spp. are common soil-dwelling organisms which kill and consume prey microbes through the secretion of antimicrobial substances. Two species of Corallococcus have been described previously (Corallococcus coralloides and Corallococcus exiguus). A polyphasic approach, including biochemical analysis of fatty acid methyl esters, substrate utilization, and sugar assimilation assays, was taken to characterize eight Corallococcus species strains and the two type strains. The genomes of all strains, including that of C. exiguus DSM 14696T (newly reported here), shared an average nucleotide identity below 95% and digital DNA-DNA hybridization scores of less than 70%, indicating that they belong to distinct species. In addition, we characterized the prey range and antibiotic resistance profile of each strain, illustrating the diversity of antimicrobial activity and, thus, the potential for drug discovery within the Corallococcus genus. Each strain gave a distinct profile of properties, which together with their genomic differences supports the proposal of the eight candidate strains as novel species. The eight candidates are as follows: Corallococcus exercitus sp. nov. (AB043AT = DSM 108849T = NBRC 113887T), Corallococcus interemptor sp. nov. (AB047AT = DSM 108843T = NBRC 113888T), Corallococcus aberystwythensis sp. nov. (AB050AT = DSM 108846T = NBRC 114019T), Corallococcus praedator sp. nov. (CA031BT = DSM 108841T = NBRC 113889T), Corallococcus sicarius sp. nov. (CA040BT = DSM 108850T = NBRC 113890T), Corallococcus carmarthensis sp. nov. (CA043DT = DSM 108842T = NBRC 113891T), Corallococcus llansteffanensis sp. nov. (CA051BT = DSM 108844T = NBRC 114100T), and Corallococcus terminator sp. nov. (CA054AT = DSM 108848T = NBRC 113892T).IMPORTANCE Corallococcus is a genus of predators with broad prey ranges, whose genomes contain large numbers of gene clusters for secondary metabolite biosynthesis. The physiology and evolutionary heritage of eight Corallococcus species strains were characterized using a range of analyses and assays. Multiple metrics confirmed that each strain belonged to a novel species within the Corallococcus genus. The strains exhibited distinct patterns of drug resistance and predatory activity, which mirrored their possession of diverse sets of biosynthetic genes. The breadth of antimicrobial activities observed within the Corallococcus genus highlights their potential for drug discovery and suggests a previous underestimation of both their taxonomic diversity and biotechnological potential. Taxonomic assignment of environmental isolates to novel species allows us to begin to characterize the diversity and evolution of members of this bacterial genus with potential biotechnological importance, guiding future bioprospecting efforts for novel biologically active metabolites and antimicrobials.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  comparative genomics; myxobacteria; predation; predator; prey

Mesh:

Year:  2020        PMID: 31676482      PMCID: PMC6952226          DOI: 10.1128/AEM.01931-19

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  27 in total

Review 1.  Biology and global distribution of myxobacteria in soils.

Authors:  W Dawid
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2.  AmphoraNet: the webserver implementation of the AMPHORA2 metagenomic workflow suite.

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3.  Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an Opinion.

Authors:  Elke Lang; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-30       Impact factor: 2.747

Review 4.  Is "Wolf-Pack" Predation by Antimicrobial Bacteria Cooperative? Cell Behaviour and Predatory Mechanisms Indicate Profound Selfishness, Even when Working Alongside Kin.

Authors:  Rupert C Marshall; David E Whitworth
Journal:  Bioessays       Date:  2019-03-27       Impact factor: 4.345

5.  Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Authors:  Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S da Costa; Alejandro P Rooney; Hana Yi; Xue-Wei Xu; Sofie De Meyer; Martha E Trujillo
Journal:  Int J Syst Evol Microbiol       Date:  2018-01       Impact factor: 2.747

6.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

7.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

8.  Myxobacteria Are Able to Prey Broadly upon Clinically-Relevant Pathogens, Exhibiting a Prey Range Which Cannot Be Explained by Phylogeny.

Authors:  Paul G Livingstone; Russell M Morphew; David E Whitworth
Journal:  Front Microbiol       Date:  2017-08-22       Impact factor: 5.640

9.  Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential.

Authors:  Katherine Gregory; Laura A Salvador; Shukria Akbar; Barbara I Adaikpoh; D Cole Stevens
Journal:  Microorganisms       Date:  2019-06-24

10.  Comparison of myxobacterial diversity and evaluation of isolation success in two niches: Kiritimati Island and German compost.

Authors:  Kathrin I Mohr; Marc Stechling; Joachim Wink; Elke Wilharm; Marc Stadler
Journal:  Microbiologyopen       Date:  2015-12-15       Impact factor: 3.139

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  11 in total

1.  Corallococcus soli sp. Nov., a Soil Myxobacterium Isolated from Subtropical Climate, Chalus County, Iran, and Its Potential to Produce Secondary Metabolites.

Authors:  Zahra Khosravi Babadi; Ronald Garcia; Gholam Hossein Ebrahimipour; Chandra Risdian; Peter Kämpfer; Michael Jarek; Rolf Müller; Joachim Wink
Journal:  Microorganisms       Date:  2022-06-21

2.  The Functional Biogeography of eDNA Metacommunities in the Post-Fire Landscape of the Angeles National Forest.

Authors:  Savanah Senn; Sharmodeep Bhattacharyya; Gerald Presley; Anne E Taylor; Bruce Nash; Ray A Enke; Karen B Barnard-Kubow; Jillian Ford; Brandon Jasinski; Yekaterina Badalova
Journal:  Microorganisms       Date:  2022-06-14

3.  Corallococcus silvisoli sp. nov., a novel myxobacterium isolated from subtropical forest soil.

Authors:  Xian-Jiao Zhang; Guang-Da Feng; Yang Liu; Yang Zhou; Xiaoqin Deng; Qing Yao; Honghui Zhu
Journal:  Arch Microbiol       Date:  2022-01-18       Impact factor: 2.552

4.  The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?

Authors:  Sebastian Petters; Verena Groß; Andrea Söllinger; Michelle Pichler; Anne Reinhard; Mia Maria Bengtsson; Tim Urich
Journal:  ISME J       Date:  2021-03-21       Impact factor: 11.217

5.  A myxobacterial GH19 lysozyme with bacteriolytic activity on both Gram-positive and negative phytopathogens.

Authors:  Yueqiu Li; Xiaoli Zhou; Xianjiao Zhang; Zhiqiang Xu; Honghong Dong; Guohui Yu; Ping Cheng; Qing Yao; Honghui Zhu
Journal:  AMB Express       Date:  2022-05-12       Impact factor: 4.126

6.  A Genomic Survey of Signalling in the Myxococcaceae.

Authors:  David E Whitworth; Allison Zwarycz
Journal:  Microorganisms       Date:  2020-11-06

7.  Culture-dependent and -independent methods revealed an abundant myxobacterial community shaped by other bacteria and pH in Dinghushan acidic soils.

Authors:  Chunling Wang; Yingying Lv; Anzhang Li; Qing Yao; Guangda Feng; Honghui Zhu
Journal:  PLoS One       Date:  2020-09-14       Impact factor: 3.240

8.  Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis sp. nov., Myxococcus vastator sp. nov., Pyxidicoccus caerfyrddinensis sp. nov., and Pyxidicoccus trucidator sp. nov.

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Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416

9.  Assessment of Evolutionary Relationships for Prioritization of Myxobacteria for Natural Product Discovery.

Authors:  Andrew Ahearne; Hanan Albataineh; Scot E Dowd; D Cole Stevens
Journal:  Microorganisms       Date:  2021-06-24

10.  Myxobacteria of the Cystobacterineae Suborder Are Producers of New Vitamin K2 Derived Myxoquinones.

Authors:  Fabian Panter; Alexander Popoff; Ronald Garcia; Daniel Krug; Rolf Müller
Journal:  Microorganisms       Date:  2022-02-28
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