Literature DB >> 31671333

MFP-Unet: A novel deep learning based approach for left ventricle segmentation in echocardiography.

Shakiba Moradi1, Mostafa Ghelich Oghli2, Azin Alizadehasl3, Isaac Shiri4, Niki Oveisi5, Mehrdad Oveisi6, Majid Maleki7, Jan Dhooge8.   

Abstract

Segmentation of the Left ventricle (LV) is a crucial step for quantitative measurements such as area, volume, and ejection fraction. However, the automatic LV segmentation in 2D echocardiographic images is a challenging task due to ill-defined borders, and operator dependence issues (insufficient reproducibility). U-net, which is a well-known architecture in medical image segmentation, addressed this problem through an encoder-decoder path. Despite outstanding overall performance, U-net ignores the contribution of all semantic strengths in the segmentation procedure. In the present study, we have proposed a novel architecture to tackle this drawback. Feature maps in all levels of the decoder path of U-net are concatenated, their depths are equalized, and up-sampled to a fixed dimension. This stack of feature maps would be the input of the semantic segmentation layer. The performance of the proposed model was evaluated using two sets of echocardiographic images: one public dataset and one prepared dataset. The proposed network yielded significantly improved results when comparing with results from U-net, dilated U-net, Unet++, ACNN, SHG, and deeplabv3. An average Dice Metric (DM) of 0.953, Hausdorff Distance (HD) of 3.49, and Mean Absolute Distance (MAD) of 1.12 are achieved in the public dataset. The correlation graph, bland-altman analysis, and box plot showed a great agreement between automatic and manually calculated volume, area, and length.
Copyright © 2019 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  2-D Echocardiography; Convolutional neural network; Segmentation

Mesh:

Year:  2019        PMID: 31671333     DOI: 10.1016/j.ejmp.2019.10.001

Source DB:  PubMed          Journal:  Phys Med        ISSN: 1120-1797            Impact factor:   2.685


  9 in total

1.  Generalizable fully automated multi-label segmentation of four-chamber view echocardiograms based on deep convolutional adversarial networks.

Authors:  Arghavan Arafati; Daisuke Morisawa; Michael R Avendi; M Reza Amini; Ramin A Assadi; Hamid Jafarkhani; Arash Kheradvar
Journal:  J R Soc Interface       Date:  2020-08-19       Impact factor: 4.118

2.  Left Ventricle Segmentation in Cardiac MR Images via an Improved ResUnet.

Authors:  Shengzhou Xu; Haoran Lu; Shiyu Cheng; Chengdan Pei
Journal:  Int J Biomed Imaging       Date:  2022-07-08

Review 3.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

4.  "Keep it simple, scholar": an experimental analysis of few-parameter segmentation networks for retinal vessels in fundus imaging.

Authors:  Weilin Fu; Katharina Breininger; Roman Schaffert; Zhaoya Pan; Andreas Maier
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-04-30       Impact factor: 2.924

5.  Automatic Left Ventricle Segmentation from Short-Axis Cardiac MRI Images Based on Fully Convolutional Neural Network.

Authors:  Zakarya Farea Shaaf; Muhammad Mahadi Abdul Jamil; Radzi Ambar; Ahmed Abdu Alattab; Anwar Ali Yahya; Yousef Asiri
Journal:  Diagnostics (Basel)       Date:  2022-02-05

6.  Automatic cardiac evaluations using a deep video object segmentation network.

Authors:  Nasim Sirjani; Shakiba Moradi; Mostafa Ghelich Oghli; Ali Hosseinsabet; Azin Alizadehasl; Mona Yadollahi; Isaac Shiri; Ali Shabanzadeh
Journal:  Insights Imaging       Date:  2022-04-08

7.  Accurate 3D Reconstruction of White Matter Hyperintensities Based on Attention-Unet.

Authors:  Xun Wang; Lisheng Wang; Jianjun Yang; Xiaoya Feng
Journal:  Comput Math Methods Med       Date:  2022-03-23       Impact factor: 2.238

8.  Clinical target segmentation using a novel deep neural network: double attention Res-U-Net.

Authors:  Vahid Ashkani Chenarlogh; Ali Shabanzadeh; Mostafa Ghelich Oghli; Nasim Sirjani; Sahar Farzin Moghadam; Ardavan Akhavan; Hossein Arabi; Isaac Shiri; Zahra Shabanzadeh; Morteza Sanei Taheri; Mohammad Kazem Tarzamni
Journal:  Sci Rep       Date:  2022-04-25       Impact factor: 4.996

9.  Real-time echocardiography image analysis and quantification of cardiac indices.

Authors:  Ghada Zamzmi; Sivaramakrishnan Rajaraman; Li-Yueh Hsu; Vandana Sachdev; Sameer Antani
Journal:  Med Image Anal       Date:  2022-06-09       Impact factor: 13.828

  9 in total

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