Literature DB >> 32811299

Generalizable fully automated multi-label segmentation of four-chamber view echocardiograms based on deep convolutional adversarial networks.

Arghavan Arafati1, Daisuke Morisawa1, Michael R Avendi1,2, M Reza Amini3, Ramin A Assadi4, Hamid Jafarkhani2, Arash Kheradvar1.   

Abstract

A major issue in translation of the artificial intelligence platforms for automatic segmentation of echocardiograms to clinics is their generalizability. The present study introduces and verifies a novel generalizable and efficient fully automatic multi-label segmentation method for four-chamber view echocardiograms based on deep fully convolutional networks (FCNs) and adversarial training. For the first time, we used generative adversarial networks for pixel classification training, a novel method in machine learning not currently used for cardiac imaging, to overcome the generalization problem. The method's performance was validated against manual segmentations as the ground-truth. Furthermore, to verify our method's generalizability in comparison with other existing techniques, we compared our method's performance with a state-of-the-art method on our dataset in addition to an independent dataset of 450 patients from the CAMUS (cardiac acquisitions for multi-structure ultrasound segmentation) challenge. On our test dataset, automatic segmentation of all four chambers achieved a dice metric of 92.1%, 86.3%, 89.6% and 91.4% for LV, RV, LA and RA, respectively. LV volumes' correlation between automatic and manual segmentation were 0.94 and 0.93 for end-diastolic volume and end-systolic volume, respectively. Excellent agreement with chambers' reference contours and significant improvement over previous FCN-based methods suggest that generative adversarial networks for pixel classification training can effectively design generalizable fully automatic FCN-based networks for four-chamber segmentation of echocardiograms even with limited number of training data.

Entities:  

Keywords:  artificial intelligence; deep learning; echocardiography; fully automated segmentation; generative adversarial network; machine learning

Mesh:

Year:  2020        PMID: 32811299      PMCID: PMC7482559          DOI: 10.1098/rsif.2020.0267

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  38 in total

1.  Automated Algorithmic Software in Echocardiography: Artificial Intelligence?

Authors:  Nicholas Furiasse; James D Thomas
Journal:  J Am Coll Cardiol       Date:  2015-09-29       Impact factor: 24.094

2.  Combining multiple dynamic models and deep learning architectures for tracking the left ventricle endocardium in ultrasound data.

Authors:  Gustavo Carneiro; Jacinto C Nascimento
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-11       Impact factor: 6.226

3.  Segmentation and tracking in echocardiographic sequences: active contours guided by optical flow estimates.

Authors:  I Mikić; S Krucinski; J D Thomas
Journal:  IEEE Trans Med Imaging       Date:  1998-04       Impact factor: 10.048

4.  A Deep Learning Approach for Assessment of Regional Wall Motion Abnormality From Echocardiographic Images.

Authors:  Kenya Kusunose; Takashi Abe; Akihiro Haga; Daiju Fukuda; Hirotsugu Yamada; Masafumi Harada; Masataka Sata
Journal:  JACC Cardiovasc Imaging       Date:  2019-05-15

5.  Automatic segmentation of the right ventricle from cardiac MRI using a learning-based approach.

Authors:  Michael R Avendi; Arash Kheradvar; Hamid Jafarkhani
Journal:  Magn Reson Med       Date:  2017-02-16       Impact factor: 4.668

6.  A 3-D Active Contour Method for Automated Segmentation of the Left Ventricle From Magnetic Resonance Images.

Authors:  Mahdi Hajiaghayi; Elliott M Groves; Hamid Jafarkhani; Arash Kheradvar
Journal:  IEEE Trans Biomed Eng       Date:  2016-03-31       Impact factor: 4.538

7.  Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?

Authors:  Nima Tajbakhsh; Jae Y Shin; Suryakanth R Gurudu; R Todd Hurst; Christopher B Kendall; Michael B Gotway
Journal:  IEEE Trans Med Imaging       Date:  2016-03-07       Impact factor: 10.048

8.  Fully Automated Versus Standard Tracking of Left Ventricular Ejection Fraction and Longitudinal Strain: The FAST-EFs Multicenter Study.

Authors:  Christian Knackstedt; Sebastiaan C A M Bekkers; Georg Schummers; Marcus Schreckenberg; Denisa Muraru; Luigi P Badano; Andreas Franke; Chirag Bavishi; Alaa Mabrouk Salem Omar; Partho P Sengupta
Journal:  J Am Coll Cardiol       Date:  2015-09-29       Impact factor: 24.094

9.  Analysis of interinstitutional observer agreement in interpretation of dobutamine stress echocardiograms.

Authors:  R Hoffmann; H Lethen; T Marwick; M Arnese; P Fioretti; A Pingitore; E Picano; T Buck; R Erbel; F A Flachskampf; P Hanrath
Journal:  J Am Coll Cardiol       Date:  1996-02       Impact factor: 24.094

10.  Automated Echocardiographic Quantification of Left Ventricular Ejection Fraction Without Volume Measurements Using a Machine Learning Algorithm Mimicking a Human Expert.

Authors:  Federico M Asch; Nicolas Poilvert; Theodore Abraham; Madeline Jankowski; Jayne Cleve; Michael Adams; Nathanael Romano; Ha Hong; Victor Mor-Avi; Randolph P Martin; Roberto M Lang
Journal:  Circ Cardiovasc Imaging       Date:  2019-09-16       Impact factor: 7.792

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  2 in total

1.  Generalizability and quality control of deep learning-based 2D echocardiography segmentation models in a large clinical dataset.

Authors:  Xiaoyan Zhang; Alvaro E Ulloa Cerna; Joshua V Stough; Yida Chen; Brendan J Carry; Amro Alsaid; Sushravya Raghunath; David P vanMaanen; Brandon K Fornwalt; Christopher M Haggerty
Journal:  Int J Cardiovasc Imaging       Date:  2022-02-24       Impact factor: 2.357

2.  Automatic cardiac evaluations using a deep video object segmentation network.

Authors:  Nasim Sirjani; Shakiba Moradi; Mostafa Ghelich Oghli; Ali Hosseinsabet; Azin Alizadehasl; Mona Yadollahi; Isaac Shiri; Ali Shabanzadeh
Journal:  Insights Imaging       Date:  2022-04-08
  2 in total

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