Literature DB >> 31670338

Thermodynamic analysis of multivalent binding of functionalized nanoparticles to membrane surface reveals the importance of membrane entropy and nanoparticle entropy in adhesion of flexible nanoparticles.

Samaneh Farokhirad1, Ryan P Bradley2, Ravi Radhakrishnan3.   

Abstract

We present a quantitative model for multivalent binding of ligand-coated flexible polymeric nanoparticles (NPs) to a flexible membrane expressing receptors. The model is developed using a multiscale computational framework by coupling a continuum field model for the cell membrane with a coarse-grained model for the polymeric NPs. The NP is modeled as a self-avoiding bead-spring polymer chain, and the cell membrane is modeled as a triangulated surface using the dynamically triangulated Monte Carlo method. The nanoparticle binding affinity to a cell surface is mainly determined by the delicate balance between the enthalpic gain due to the multivalent ligand-receptor binding and the entropic penalties of various components including receptor translation, membrane undulation, and NP conformation. We have developed new methods to compute the free energy of binding, which includes these enthalpy and entropy terms. We show that the multivalent interactions between the flexible NP and the cell surface are subject to entropy-enthalpy compensation. Three different entropy contributions, namely, those due to receptor-ligand translation, NP flexibility, and membrane undulations, are all significant, although the first of these terms is the most dominant. However, both NP flexibility and membrane undulations dictate the receptor-ligand translational entropy making the entropy compensation context-specific, i.e., dependent on whether the NP is rigid or flexible, and on the state of the membrane given by the value of membrane tension or its excess area.

Entities:  

Year:  2019        PMID: 31670338      PMCID: PMC6868310          DOI: 10.1039/c9sm01653h

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  48 in total

1.  Molecular modeling of the relationship between nanoparticle shape anisotropy and endocytosis kinetics.

Authors:  Ye Li; Tongtao Yue; Kai Yang; Xianren Zhang
Journal:  Biomaterials       Date:  2012-04-05       Impact factor: 12.479

2.  Absolute and relative entropies from computer simulation with applications to ligand binding.

Authors:  Jens Carlsson; Johan Aqvist
Journal:  J Phys Chem B       Date:  2005-04-07       Impact factor: 2.991

3.  The Role of Glycocalyx in Nanocarrier-Cell Adhesion Investigated Using a Thermodynamic Model and Monte Carlo Simulations.

Authors:  Neeraj J Agrawal; Ravi Radhakrishnan
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2007-11-01       Impact factor: 4.126

Review 4.  The design of polyvalent therapeutics.

Authors:  Amit Joshi; David Vance; Prakash Rai; Aditya Thiyagarajan; Ravi S Kane
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

5.  Monte Carlo simulations of fluid vesicles with in-plane orientational ordering.

Authors:  N Ramakrishnan; P B Sunil Kumar; John H Ipsen
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-29

6.  The minimum energy of bending as a possible explanation of the biconcave shape of the human red blood cell.

Authors:  P B Canham
Journal:  J Theor Biol       Date:  1970-01       Impact factor: 2.691

7.  Hydrodynamic interactions of deformable polymeric nanocarriers and the effect of crosslinking.

Authors:  Arijit Sarkar; David M Eckmann; Portonovo S Ayyaswamy; Ravi Radhakrishnan
Journal:  Soft Matter       Date:  2015-08-07       Impact factor: 3.679

8.  Selective tumor cell targeting using low-affinity, multivalent interactions.

Authors:  Coby B Carlson; Patricia Mowery; Robert M Owen; Emily C Dykhuizen; Laura L Kiessling
Journal:  ACS Chem Biol       Date:  2007-02-26       Impact factor: 5.100

9.  Calculation of free energies in fluid membranes subject to heterogeneous curvature fields.

Authors:  Neeraj J Agrawal; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-30

10.  Motion of a nano-spheroid in a cylindrical vessel flow: Brownian and hydrodynamic interactions.

Authors:  N Ramakrishnan; Y Wang; D M Eckmann; P S Ayyaswamy; R Radhakrishnan
Journal:  J Fluid Mech       Date:  2017-05-18       Impact factor: 3.627

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  2 in total

1.  Biophysical Considerations in the Rational Design and Cellular Targeting of Flexible Polymeric Nanoparticles.

Authors:  Samaneh Farokhirad; Sreeja Kutti Kandy; Andrew Tsourkas; Portonovo S Ayyaswamy; David M Eckmann; Ravi Radhakrishnan
Journal:  Adv Mater Interfaces       Date:  2021-11-11       Impact factor: 6.389

Review 2.  Quantifying and controlling bond multivalency for advanced nanoparticle targeting to cells.

Authors:  Elliot Y Makhani; Ailin Zhang; Jered B Haun
Journal:  Nano Converg       Date:  2021-11-30
  2 in total

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