Literature DB >> 31669138

Catalytic RNA, ribozyme, and its applications in synthetic biology.

Soyeon V Park1, Jae-Seong Yang2, Hyesung Jo1, Byunghwa Kang1, Seung Soo Oh3, Gyoo Yeol Jung4.   

Abstract

Ribozymes are functional RNA molecules that can catalyze biochemical reactions. Since the discovery of the first catalytic RNA, various functional ribozymes (e.g., self-cleaving ribozymes, splicing ribozymes, RNase P, etc.) have been uncovered, and their structures and mechanisms have been identified. Ribozymes have the advantage of possessing features of "RNA" molecules; hence, they are highly applicable for manipulating various biological systems. To fully employ ribozymes in a broad range of biological applications in synthetic biology, a variety of ribozymes have been developed and engineered. Here, we summarize the main features of ribozymes and the methods used for engineering their functions. We also describe the past and recent efforts towards exploiting ribozymes for effective and novel applications in synthetic biology. Based on studies on their significance in biological applications till date, ribozymes are expected to advance technologies in artificial biological systems.
Copyright © 2019 Elsevier Inc. All rights reserved.

Keywords:  Activity regulation; Catalytic RNA; Detecting system; Expression control; Gene editing; Logic circuit; Ribozyme; Self-cleavage; Splicing; Synthetic biology

Mesh:

Substances:

Year:  2019        PMID: 31669138     DOI: 10.1016/j.biotechadv.2019.107452

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  15 in total

1.  Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space.

Authors:  Arthur Korman; Huabing Sun; Boyang Hua; Haozhe Yang; Joseph N Capilato; Rakesh Paul; Subrata Panja; Taekjip Ha; Marc M Greenberg; Sarah A Woodson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-19       Impact factor: 11.205

Review 2.  Enhancing CAR-T Cell Therapy with Functional Nucleic Acids.

Authors:  Bruktawit Maru; Lea Nadeau; Maureen McKeague
Journal:  ACS Pharmacol Transl Sci       Date:  2021-11-17

3.  Streamlined CRISPR genome engineering in wild-type bacteria using SIBR-Cas.

Authors:  Constantinos Patinios; Sjoerd C A Creutzburg; Adini Q Arifah; Belén Adiego-Pérez; Evans A Gyimah; Colin J Ingham; Servé W M Kengen; John van der Oost; Raymond H J Staals
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 4.  Engineering synthetic RNA devices for cell control.

Authors:  Peter B Dykstra; Matias Kaplan; Christina D Smolke
Journal:  Nat Rev Genet       Date:  2022-01-04       Impact factor: 59.581

Review 5.  Genetically encoded RNA nanodevices for cellular imaging and regulation.

Authors:  Qikun Yu; Kewei Ren; Mingxu You
Journal:  Nanoscale       Date:  2021-05-06       Impact factor: 7.790

6.  Imaginary Ribozymes.

Authors:  Ronald R Breaker
Journal:  ACS Chem Biol       Date:  2020-08-03       Impact factor: 5.100

7.  Posttranscriptional modifications at the 37th position in the anticodon stem-loop of tRNA: structural insights from MD simulations.

Authors:  Preethi Seelam Prabhakar; Nathania A Takyi; Stacey D Wetmore
Journal:  RNA       Date:  2020-11-19       Impact factor: 4.942

8.  A cell-based ribozyme reporter system employing a chromosomally-integrated 5' exonuclease gene.

Authors:  Aiyada Aroonsri; Jindaporn Kongsee; Jeremy David Gunawan; Daniel Abidin Aubry; Philip James Shaw
Journal:  BMC Mol Cell Biol       Date:  2021-03-16

Review 9.  Extremely Low Leakage Expression Systems Using Dual Transcriptional-Translational Control for Toxic Protein Production.

Authors:  Yusuke Kato
Journal:  Int J Mol Sci       Date:  2020-01-21       Impact factor: 5.923

10.  Functional Constitutional Dynamic Networks Revealing Evolutionary Reproduction/Variation/Selection Principles.

Authors:  Liang Yue; Shan Wang; Itamar Willner
Journal:  J Am Chem Soc       Date:  2020-08-11       Impact factor: 15.419

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