| Literature DB >> 31665780 |
Ondari D Mogeni1, Ligia María Cruz Espinoza1, Justin Im1, Ursula Panzner1, Trevor Toy1, Gi Deok Pak1, Andrea Haselbeck1, Enusa Ramani1, Heidi Schütt-Gerowitt2, Jan Jacobs3,4, Octavie Lunguya Metila5,6, Oluwafemi J Adewusi7, Iruka N Okeke8, Veronica I Ogunleye7, Ellis Owusu-Dabo9, Raphaël Rakotozandrindrainy10, Abdramane Bassiahi Soura11, Mekonnen Teferi12, Keriann Conway Roy13, William Macwright13, Robert F Breiman13, Jerome H Kim1, Vittal Mogasale1, Stephen Baker14,15, Se Eun Park1,15, Florian Marks1,14.
Abstract
BACKGROUND: There is limited information on the best practices for monitoring multicountry epidemiological studies. Here, we describe the monitoring and evaluation procedures created for the multicountry Severe Typhoid Fever in Africa (SETA) study.Entities:
Keywords: zzm321990 Salmonellazzm321990 ; Africa; epidemiology; monitoring; multi-country
Mesh:
Year: 2019 PMID: 31665780 PMCID: PMC6821296 DOI: 10.1093/cid/ciz597
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 9.079
Description of the Severe Typhoid in Africa Program
| Key Elements of SETA Surveillance Program | |
|---|---|
| Objectives & outcomes | 1. To estimate the burden and severity of invasive |
| 2. To assess the immune response to natural TF, PF, and iNTS infections over a 1-year follow-up period | |
| 3. To estimate the prevalence of | |
| 4. To estimate public and private expenditures for treatment and productivity loss associated with illness due to TF, PF, and iNTS infectionsa | |
| 5. To estimate the effects of invasive salmonellosis on the quality of life of patients and the subsequent disease-related family and societal burdens over a 1-year follow-up perioda | |
| 6. To validate a new rtPCR assay for the diagnosis of invasive | |
| Inclusion criteria | 1. Suspected |
| 2. Suspected | |
| 3. Neighborhood Controls (NCs)Age (±5 years), sex and residency (neighborhood) matched to | |
| 4. Household Contacts (HCs)Immediate household contacts of | |
| Data source(s) | 1. Healthcare facilities participating in SETA |
| 2. Follow-up activities in cases, controls, and contacts identified during surveillance activities | |
| 3. Laboratories participating in SETA (on site and reference laboratories) | |
| Population under surveillance | Burkina Faso, Ethiopia, Ghana, Democratic Republic of Congo, Madagascar, and Nigeria |
| Surveillance sites | Burkina Faso: Ouagadougou; Kossodo |
| Type of surveillance | Passive, sentinel, voluntary |
| Information to be reported | Case-based information collected on a daily basis from different data sources |
| Reporting format | Electronic (Nigeria); paper-based (Burkina Faso, DRC, Ethiopia, Ghana, Madagascar) |
| Data entry | Electronic tablet (SETA Collect app for Android) |
| Database architecture | Data collected electronically is held in the IVI server hosted in Seoul, South Korea. Data entered from paper-based forms are stored on local computers and sent to IVI monthly. |
Abbreviations: iNTS, invasive nontyphoidal Salmonella; IVI, International Vaccine Institute; PF, paratyphoid fever; rtPCR, real-time polymerase chain reaction; SETA, Severe Typhoid Fever in Africa; TF, Typhoid fever.
aObjectives not applicable to all SETA countries with a protocol different from the main SETA protocol and standard operating procedures. Monitoring procedures related to these objectives are excluded from this manuscript.
bAny suspected case must sign an informed consent form to be included in the study.
Figure 1.Aspects to consider when developing a monitoring plan tailored to study needs.
Figure 2.Core activities in the SETA program.
Severe Typhoid in Africa Objective-specific Monitoring Indicators
| Objective 1: To estimate the burden and severity of invasive |
| (1) % of screened patients eligible for enrollment
|
| Objective 2: To assess the immune response to natural TF, PF, and iNTS infection over a 1-year follow-up period |
| Objective 3: To estimate the prevalence of |
| (1)% cases with V1–V5 completed
|
Abbreviations: AMR, antimicrobial resistance; BC, blood culture; HC, healthy control; iNTS, invasive non-typhoidal Salmonella; NC, neighborhood control; NTS, non-typhoidal Salmonella; SC, stool culture; SP, Salmonella Paratyphi; ST, Salmonella Typhi; V, visit.
aCases: patients with blood culture–confirmed invasive Salmonella infection.
bAMR done for ampicillin, amoxicillin-clavulanic acid, amoxicillin, nalidixic acid, chloramphenicol, cotrimoxazole, ceftriaxone, and ciprofloxacin.
List of Procedures to Monitor and Observe in the Field
| 1. Procedures at the HCF |
| Screening of patients |
| • Screening of patients visiting the HCF
|
| Enrollment of patients |
| • Enrollment of patients
|
| Review of completed and stored study forms |
| • Place of storage of completed study forms
|
| Management of samples |
| • Storage location and temperature of blood culture bottles before use
|
| Follow-up of patients under observation |
| • Organization and strategy to follow up hospitalized patients
|
| 2. Procedures at enrollment of HCs and NCs and during follow-up visits of cases/HCs/NCs |
| Screening and enrollment of NCs and HCs |
| NCs |
| • Organization of visits to the community to screen and recruit NCs
|
| HCs |
| • Organization of visits to the house of the case to recruit HCs
|
| NCs + HCs |
| • Informed consent process (procedures described in the enrollment of patients’ section)
|
| 3. Other field procedures to monitor |
| Activities in the laboratory |
| • Sample reception at the laboratory and storage conditions before processing
|
| Data entry and management |
| • Data capturing (paper, electronic)
|
Abbreviations: GPS, Global Positioning System; HC, healthy control; HCF, healthcare facility; ICF, informed consent form; IVI, International Vaccine Institute; NC, neighborhood control; SETA, Severe Typhoid Fever in Africa; SOP, standard operating procedure.
Figure 3.Proportion of blood cultures contaminated by month during 2017 in two SETA sites. Abbreviations: APR, April; AUG, August; JUL, July; NOV, November.