| Literature DB >> 31663692 |
Xing-Zhizi Wang1, Wei-Zhong Tang2, Qun-Ying Su1, Jin-Guang Yao1, Xiao-Ying Huang1, Qin-Qin Long1, Xue-Min Wu1, Qiang Xia3, Xi-Dai Long1,3.
Abstract
Previous studies have shown that single-nucleotide polymorphisms (SNPs) of a disintegrin and metalloproteinase with thrombospondin type 1 motif 4 (ADAMTS4) may involve in the pathogenesis of some diseases. However, it is not clear whether they are associated with hepatocellular carcinoma (HCC). A hospital-based case-control study, including 862 cases with HCC and 1120 controls, was conducted to assess the effects of 258 SNPs in the coding regions of ADAMTS4 on HCC risk and prognosis. We found that six SNPs in ADAMTS4 were differential distribution between cases and controls via the primary screening analyses; however, only rs538321148 and rs1014509103 polymorphisms were further identified to modify the risk of HCC (odds ratio: 2.73 and 2.95; 95% confidence interval, 2.28-3.29 and 2.43-3.58; P-value, 5.73 × 10-27 and 1.36 × 10-27 , respectively). Significant interaction between these two SNPs and two known causes of hepatitis B virus and aflatoxin B1 were also observed. Furthermore, rs538321148 and rs1014509103 polymorphisms were associated not only with clinicopathological features of tumor such as tumor stage and grade, microvessel density, and vessel metastasis, but with poor overall survival. Additionally, these SNPs significantly downregulated ADATMS4 expression in tumor tissues. These data suggest that SNPs in the coding region of ADAMTS4, such as rs538321148 and rs1014509103, may be potential biomarkers for predicting HCC risk and prognosis.Entities:
Keywords: ADAMTS4; HCC; SNPs; prognosis; risk
Mesh:
Substances:
Year: 2019 PMID: 31663692 PMCID: PMC6912020 DOI: 10.1002/cam4.2646
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
ADAMTS4 SNPs and HCC risk
| No. | ADAMTS4 | Screening set | Validation set | Merged set | |||
|---|---|---|---|---|---|---|---|
|
| OR (95% CI/ |
| OR (95% CI/ |
| OR (95% CI/ | ||
| SNP008 | Rs150616368‐GG | 153/108 | Reference | 648/448 | Reference | 801/556 | Reference |
| GA | 41/52 | 1.80 (1.12‐2.90/0.02) | 212/172 | 1.17 (0.93‐1.48/0.18) | 253/224 | 1.28 (1.04‐1.58/0.02) | |
| AA | 6/40 | 9.44 (3.86‐23.06/8.48 × 10−7) | 60/42 | 1.01 (0.67‐1.52/0.97) | 66/82 | 1.79 (1.27‐2.51/8.86 × 10−4) | |
| GA/AA | 47/92 | 2.78 (1.81‐4.27/3.25 × 10−6) | 272/214 | 1.14 (0.92‐1.41/0.24) | 319/306 | 1.38 (1.14‐1.67/8.72 × 10−4) | |
| SNP021 | Rs538321148‐CC | 135/84 | Reference | 607/276 | Reference | 742/360 | Reference |
| CT | 62/90 | 2.36 (1.54‐3.61/7.40 × 10−5) | 274/298 | 2.39 (1.92‐2.97/7.89 × 10−15) | 336/388 | 2.38 (1.96‐2.89/1.23 × 10−18) | |
| TT | 3/26 | 14.02 (4.11‐47.78/2.45 × 10−5) | 39/88 | 4.99 (3.33‐7.49/6.95 × 10−15) | 42/114 | 5.59 (3.84‐8.14/2.66 × 10−19) | |
| CT/TT | 65/116 | 2.88 (1.91‐4.33/3.97 × 10−7) | 313/386 | 2.71 (2.20‐3.34/5.63 × 10−21) | 378/502 | 2.73 (2.28‐3.29/5.73 × 10−27) | |
| SNP105 | Rs17855812‐TT | 174/138 | Reference | 771/542 | Reference | 945/680 | Reference |
| TC | 24//57 | 3.04 (1.79‐5.16/3.70 × 10−5) | 126/110 | 1.24 (0.94‐1.64/0.12) | 150/167 | 1.55 (1.22‐1.97/3.90 × 10−4) | |
| CC | 2/5 | 2.90 (0.55‐15.30/0.21) | 23/10 | 0.61 (0.29‐1.29/0.19) | 25/15 | 0.83 (0.43‐1.58/0.56) | |
| TC/CC | 26/62 | 3.03 (1.82‐5.05/2.10 × 10−5) | 149/120 | 1.15 (0.88‐1.49/0.32) | 175/182 | 1.45 (1.15‐1.82/1.70 × 10−3) | |
| SNP141 | Rs1014509103‐GG | 155/112 | Reference | 717/357 | Reference | 872/469 | Reference |
| GA | 37/54 | 2.02 (1.24‐3.27/4.52 × 10−3) | 167/181 | 2.20 (1.72‐2.82/3.99 × 10−10) | 204/235 | 2.14 (1.72‐2.67/8.39 × 10−12) | |
| AA | 8/34 | 5.87 (2.62‐13.17/1.75 × 10−5) | 36/124 | 6.92 (4.67‐10.27/6.29 × 10−22) | 44/158 | 6.68 (4.69‐9.50/4.75 × 10−26) | |
| GA/AA | 45/88 | 2.67 (1.74‐4.15/8.02 × 10−6) | 203/305 | 3.04 (2.44‐3.79/3.84 × 10−23) | 248/393 | 2.95 (2.43‐3.58/1.36 × 10−27) | |
| SNP152 | Rs1485965919‐CC | 170/133 | Reference | 767/539 | Reference | 937/672 | Reference |
| CA | 26/59 | 2.98 (1.73‐4.85/5.31 × 10−5) | 136/108 | 1.11 (0.91‐1.36/0.30) | 162/167 | 1.44 (1.14‐1.83/2.67 × 10−3) | |
| AA | 4/8 | 2.54 (0.75‐8.65/0.14) | 17/15 | 1.13 (0.90‐1.41/0.29) | 21/23 | 1.54 (0.85‐2.81/0.16) | |
| CA/AA | 30/67 | 2.85 (1.75‐4.64/2.68 × 10−5) | 153/123 | 1.15 (0.88‐1.49/0.31) | 183/190 | 1.45 (1.16‐1.82/1.24 × 10−3) | |
| SNP171 | Rs773407656‐GG | 186/158 | Reference | 858/615 | Reference | 1044/773 | Reference |
| GA | 12/34 | 3.32 (1.66‐6.34/6.69 × 10−4) | 53/27 | 0.71 (0.44‐1.14/0.16) | 65/61 | 1.27 (0.88‐1.82/0.20) | |
| AA | 2//8 | 4.80 (1.00‐22.99/0.05) | 9/20 | 3.08 (1.40‐6.83/5.37 × 10−3) | 11/28 | 3.42 (1.69‐6.92/6.11 × 10−4) | |
| GA/AA | 14/42 | 3.53 (1.86‐6.71/1.14 × 10−4) | 62/47 | 1.05 (0.71‐1.56/0.790 | 76/89 | 1.58 (1.15‐2.18/5.12 × 10−3) | |
Abbreviations: HCC, hepatocellular carcinoma; OR, odds ratio; SNP, single‐nucleotide polymorphism.
N con/hcc refers to the number of controls/the number of cases with hepatocellular carcinoma.
OR conditional on matched set.
The haplotypes of ADAMTS4 rs538321148 and rs1014509103 polymorphisms and HCC risk
| Haplotypes | Controls, n (%) | HCCs, n (%) | OR (95% CI) |
|
|---|---|---|---|---|
| Haplotype‐N | 608 (54.3) | 281 (32.6) | Reference | |
| Haplotype‐1 | 352 (31.4) | 237 (27.5) | 1.46 (1.17‐1.81) | 6.96 × 10−4 |
| Haplotype‐2 | 124 (11.1) | 176 (20.4) | 3.07 (2.34‐4.02) | 4.09 × 10−16 |
| Haplotype‐3 | 32 (2.9) | 94 (10.9) | 6.39 (4.17‐9.78) | 1.36 × 10−17 |
| Haplotype‐4 | 4 (0.4) | 74 (8.6) | 39.87 (14.43‐110.14) | 1.16 × 10−12 |
| Haplotype‐P | 512 (45.7) | 581 (67.4) | 2.45 (2.04‐2.95) | 1.62 × 10−21 |
Abbreviations: HCC, hepatocellular carcinoma; OR, odds ratio.
Haplotype‐P and ‐N refers to ADAMTS4 haplotype with or without risk alleles (OR > 1) of rs538321148 and rs1014509103, respectively; whereas haplotype‐1 to 4 represents ADAMTS4 haplotype with 1 to 4 risk alleles of rs538321148 and rs1014509103, respectively.
OR conditional on matched set.
Joint effects of HBV infective status and adamts4 SNPs on HCC risk
| Variables | Controls, n (%) | HCCs, n (%) | OR (95% CI) |
|
|---|---|---|---|---|
| HBV (−) | ||||
| Rs538321148‐CC | 536 (47.9) | 107 (12.4) | Reference | |
| CT | 241 (21.5) | 86 (10.0) | 1.79 (1.30‐2.47) | 4.03 × 10−4 |
| TT | 39 (3.5) | 26 (3.0) | 3.35 (1.95‐5.76) | 1.16 × 10−5 |
| CT/TT | 280 (25.0) | 112 (13.0) | 2.06 (1.48‐2.71) | 6.33 × 10−6 |
| HBV (+) | ||||
| Rs538321148‐CC | 206 (18.4) | 253 (29.4) | 6.16 (4.66‐8.12) | 9.84 × 10−38 |
| CT | 95 (8.5) | 302 (35.0) | 15.95 (11.69‐21.78) | 4.52 × 10−68 |
| TT | 3 (0.3) | 88 (10.2) | 146.96 (45.65‐473.17) | 6.03 × 10−17 |
| CT/TT | 98 (8.8) | 390 (45.2) | 19.97 (14.73‐27.07) | 7.47 × 10−83 |
| HBV (−) | ||||
| Rs1014509103‐GG | 643 (57.4) | 138 (16.0) | Reference | |
| GA | 134 (12.0) | 45 (5.2) | 1.56 (1.07‐2.30) | 0.02 |
| AA | 39 (3.5) | 36 (4.2) | 4.30 (2.64‐7.02) | 5.01 × 10−9 |
| GA/AA | 173 (15.4) | 81 (9.4) | 2.19 (1.58‐3.02) | 1.93 × 10−6 |
| HBV (+) | ||||
| Rs1014509103‐GG | 229 (20.4) | 331 (38.4) | 6.74 (5.25‐8.64) | 8.74 × 10−51 |
| GA | 70 (6.3) | 190 (22.0) | 12.65 (9.08‐17.63) | 7.42 × 10−51 |
| AA | 5 (0.4) | 122 (14.2) | 113.71 (45.63‐283.35) | 2.96 × 10−24 |
| GA/AA | 75 (6.7) | 312 (36.2) | 19.45 (14.22‐26.60) | 5.20 × 10−77 |
| HBV (−) | ||||
| Haplotype‐N | 442 (39.5) | 83 (9.6) | Reference | |
| P | 374 (33.4) | 136 (15.8) | 1.93 (1.42‐2.63) | 2.52 × 10−5 |
| HBV (+) | ||||
| N | 166 (14.8) | 198 (23.0) | 6.36 (4.65‐8.68) | 3.93 × 10−31 |
| P | 138 (12.3) | 445 (51.6) | 17.27 (12.76‐23.38) | 7.06 × 10−76 |
| AFB1 (−) | ||||
| Rs538321148‐CC | 357 (31.9) | 114 (13.2) | Reference | |
| CT | 207 (18.5) | 68 (7.9) | 1.03 (0.73‐1.45) | 0.87 |
| TT | 22 (2.0) | 14 (1.6) | 1.99 (0.99‐4.02) | 0.06 |
| CT/TT | 229 (20.4) | 82 (9.5) | 1.12 (0.81‐1.56) | 0.49 |
| AFB1 (+) | ||||
| Rs538321148‐CC | 385 (34.4) | 246 (28.5) | 2.01 (1.54‐2.62) | 2.44 × 10−7 |
| CT | 129 (11.5) | 320 (37.1) | 7.80 (5.81‐10.46) | 1.08 × 10−42 |
| TT | 20 (1.8) | 100 (11.6) | 15.70 (9.29‐26.53) | 7.85 × 10−25 |
| CT/TT | 149 (13.3) | 420 (48.7) | 8.86 (6.68‐11.74) | 6.31 × 10−52 |
| AFB1 (−) | ||||
| Rs1014509103‐GG | 440 (39.3) | 127 (14.7) | Reference | |
| GA | 108 (9.6) | 45 (5.2) | 1.45 (0.97‐2.16) | 0.07 |
| AA | 38 (3.4) | 24 (2.8) | 2.20 (1.27‐3.81) | 4.74 × 10−3 |
| GA/AA | 146 (13.0) | 69 (8.0) | 1.65 (1.16‐2.33) | 5.05 × 10−3 |
| AFB1 (+) | ||||
| Rs1014509103‐GG | 432 (38.6) | 342 (39.7) | 2.76 (2.16‐3.52) | 3.22 × 10−16 |
| GA | 96 (8.6) | 190 (22.0) | 6.88 (5.02‐9.43) | 3.80 × 10−33 |
| AA | 6 (0.5) | 134 (15.5) | 77.48 (33.40‐179.73) | 3.96 × 10−24 |
| GA/AA | 102 (9.1) | 324 (37.6) | 11.04 (8.20‐14.87) | 2.57 × 10−56 |
| AFB1 (−) | ||||
| Haplotype‐N | 285 (25.4) | 94 (10.9) | Reference | |
| P | 301 (26.9) | 102 (11.8) | 1.03 (0.74‐1.42) | 0.87 |
| AFB1 (+) | ||||
| Haplotype‐N | 323 (28.8) | 187 (21.7) | 1.76 (1.31‐2.37) | 1.62 × 10−4 |
| P | 211 (18.8) | 479 (55.6) | 6.90 (5.20‐9.17) | 1.52 × 10−40 |
Abbreviation: AFB1, aflatoxin B1; CI, confidence interval; HBV, hepatitis B virus; HCC, hepatocellular carcinoma; OR, odds ratio.
OR conditional on matched set.
Haplotype‐P and ‐N refers to ADAMTS4 haplotype with or without risk alleles of rs538321148 and rs1014509103, respectively.
The ADAMTS4 SNPs and the clinic‐pathological features of HCC
| Rs538321148 | Rs1014509103 | Haplotypes of ADAMTS4 | ||||
|---|---|---|---|---|---|---|
| n | OR (95% CI/ | n | OR (95% CI/ | n | OR (95% CI/ | |
| Total | 360/502 | / | 469/393 | / | 281/581 | / |
| Gender | ||||||
| Female | 102/131 | Reference | 119/114 | Reference | 73/160 | Reference |
| Male | 258/371 | 0.94 (0.68‐1.28/0.68) | 350/279 | 0.83 (0.62‐1.12/0.3) | 208/421 | 0.73 (0.42‐1.25/0.25) |
| Age (y) | ||||||
| ≤49 | 192/250 | Reference | 250/192 | Reference | 155/287 | Reference |
| >49 | 168/252 | 1.09 (0.82‐1.44/0.56) | 219/201 | 1.19 (0.91‐1.56/0.20) | 126/294 | 1.08 (0.68‐1.69/0.76) |
| Ethnicity | ||||||
| Han | 181/233 | Reference | 228/186 | Reference | 146/268 | Reference |
| Zhuang | 179/269 | 1.17 (0.88‐1.56/0.27) | 241/207 | 1.12 (0.81‐1.54/0.50) | 135/313 | 1.16 (0.86‐1.58/0.34) |
| Smoking | ||||||
| No | 267/378 | Reference | 344/301 | Reference | 200/445 | Reference |
| Yes | 93/124 | 1.06 (0.81‐1.46/0.72) | 125/92 | 0.84 (0.62‐1.15/0.27) | 81/136 | 0.81 (0.49‐1.33/0.40) |
| Drinking | ||||||
| No | 265/379 | Reference | 354/290 | Reference | 209/435 | Reference |
| Yes | 95/123 | 0.90 (0.66‐1.23/0.51) | 115/103 | 1.09 (0.80‐1.49/0.58) | 72/146 | 1.08 (0.81‐1.43/0.61) |
| HBV infection | ||||||
| Negative | 107/112 | Reference | 138/81 | Reference | 83/136 | Reference |
| Positive | 253/390 | 2.41 (0.93‐6.19/0.07) | 331/312 | 1.90 (0.79‐4.61/0.15) | 198/445 | 1.59 (0.60‐4.25/0.36) |
| HCV infection status | ||||||
| Negative | 296/407 | Reference | 382/321 | Reference | 229/474 | Reference |
| Positive | 64/95 | 0.93 (0.54‐1.61/0.79) | 87/72 | 0.89 (0.47‐1.69/0.72) | 52/107 | 0.95 (0.50‐1.80/0.88) |
| AFB1 exposure status | ||||||
| Negative | 114/82 | Reference | 127/69 | Reference | 94/102 | Reference |
| Positive | 246/420 | 1.96 (1.39‐2.77/1.37 × 10−4) | 342/324 | 1.81 (1.08‐2.00/0.02) | 187/479 | 1.88 (1.32‐2.67/5.20 × 10−4) |
| Tumor size | ||||||
| ≤5 cm | 60/55 | Reference | 79/36 | Reference | 48/67 | Reference |
| >5 cm | 300/447 | 1.64 (1.10‐2.43/0.01) | 390/357 | 2.02 (1.32‐3.07/1.07 × 10−3) | 233/514 | 1.60 (1.07‐2.39/0.02) |
| Tumor grade | ||||||
| Low | 197/175 | Reference | 241/131 | Reference | 167/205 | Reference |
| High | 163/327 | 1.82 (1.35‐2.45/9.13 × 10−5) | 228/262 | 1.64 (1.23‐2.23/1.03 × 10−3) | 114/376 | 2.06 (1.50‐2.83/8.47 × 10−6) |
| TNM stage | ||||||
| I | 43/29 | Reference | 59/13 | Reference | 38/34 | Reference |
| II | 241/285 | 1.31 (0.58‐2.95/0.52) | 314/212 | 3.13 (1.30‐7.53/0.01) | 196/330 | 1.94 (0.79‐4.72/0.15) |
| III | 76/188 | 2.44 (1.04‐5.72/0.04) | 96/168 | 7.56 (3.02‐18.88/1.50 × 10−5) | 47/217 | 4.73 (1.83‐12.23/1.35 × 10−3) |
| MVD | ||||||
| Low | 240/169 | Reference | 288/121 | Reference | 199/210 | Reference |
| High | 120/333 | 3.93 (2.95‐5.23/1.02 × 10−20) | 181/272 | 3.58 (2.69‐4.75/1.36 × 10−18) | 82/371 | 4.26 (3.13‐5.80/3.09 × 10−20) |
| PVT | ||||||
| No | 124/88 | Reference | 146/66 | Reference | 108/104 | Reference |
| Yes | 236/414 | 1.82 (1.29‐2.56/5.85 × 10−4) | 323/327 | 1.68 (1.17‐2.40/4.50 × 10−3) | 173/477 | 2.01 (1.42‐2.85/8.85 × 10−5) |
| Liver cirrhosis | ||||||
| No | 114/128 | Reference | 149/93 | Reference | 90/152 | Reference |
| Yes | 246/374 | 0.63 (0.25‐1.59/0.33) | 320/300 | 0.91 (0.39‐1.61/0.83) | 191/429 | 1.30 (0.95‐1.78/0.10) |
Abbreviations: AFB1, aflatoxin B1; CI, confidence interval; MVD, microvessel density; OR, odds ratio.
The number of cases with rs538321148‐CC genotype/the number of cases with rs538321148‐CT/TT genotypes.
The number of cases with rs1014509103‐GG genotype/the number of cases with rs1014509103‐GA/AA genotype genotypes.
The number of cases with ADAMTS4 Haplotype‐N/the number of cases with ADAMTS4 Haplotype‐P.
The age of cases was classed into two groups according to the mean age of cases.
Tumor grade was classed into two groups, low grade (Edmondson grade I and II) and high grade (Edmondson grade III and IV), according to Edmondson differentiation grading system.
MVD was classed into two groups, low grade (≤50/×200 magnifications) and high grade (>50/×200 magnifications), according to the number of MVD in the tumor tissues.
Figure 1ADAMTS4 rs538321148 and rs1014509103 polymorphisms significantly correlating with hepatocellular carcinoma prognosis. Cumulative hazard function was plotted by Kaplan‐Meier's methodology, and P value was calculated with two‐sided log‐rank tests. The relative hazard ratio values for genotypes were calculated using multivariable cox regression models (with all significant variables) based on forward‐step method with likelihood ratio test. Abbreviations: H‐1, ADAMTS4 haplotype with 1 risk allele of rs538321148 and rs1014509103; H‐2, ADAMTS4 haplotype with 2 risk alleles of rs538321148 and rs1014509103; H‐3, ADAMTS4 haplotype with 3 risk alleles of rs538321148 and rs1014509103; H‐4, ADAMTS4 haplotype with 4 risk alleles of rs538321148 and rs1014509103; H‐N, ADAMTS4 haplotype without risk alleles of rs538321148 and rs1014509103; HR, hazard ratio
Figure 2ADAMTS4 rs538321148 and rs1014509103 polymorphisms significantly associating with ADAMTS4 expression. A and B, The ADAMTS4 mRNA levels in the fresh tissues with hepatocellular carcinoma (n = 25) were tested using TaqMan real‐time quantitative PCR method and its relative expression was calculated by the comparative CT method. Data were shown as means ± SD and tested by ANOVA test. C‐F, The protein amount of ADAMTS4 in the paraffin‐embedded tissues with HCC (n = 862) were tested using immunohistochemistry method. To analyze, the levels of ADAMTS4 protein were divided into three groups: low expression group (LE, immunoreaction score ≤ 4), medium expression group (ME, 4 < IRS < 8), and high expression group (HE, IRS ≥ 8). The associations between the levels of ADAMTS4 protein and either rs538321148 (C) or rs1014509103 (D) were analyzed using Spearman's correlation model. Represent immunohistochemistry plots shows their associations (E, F)