Literature DB >> 31659335

A deep learning framework for neuroscience.

Blake A Richards1,2,3,4, Timothy P Lillicrap5,6, Denis Therien7, Konrad P Kording8,9,10, Philippe Beaudoin7, Yoshua Bengio11,8,12, Rafal Bogacz13, Amelia Christensen14, Claudia Clopath15, Rui Ponte Costa16,17, Archy de Berker7, Surya Ganguli18,19, Colleen J Gillon20,21, Danijar Hafner19,22,23, Adam Kepecs24, Nikolaus Kriegeskorte25,26, Peter Latham27, Grace W Lindsay26,28, Kenneth D Miller26,28,29, Richard Naud30,31, Christopher C Pack32, Panayiota Poirazi33, Pieter Roelfsema34, João Sacramento35, Andrew Saxe36, Benjamin Scellier11,12, Anna C Schapiro37, Walter Senn17, Greg Wayne5, Daniel Yamins38,39,40, Friedemann Zenke41,42, Joel Zylberberg8,43,44.   

Abstract

Systems neuroscience seeks explanations for how the brain implements a wide variety of perceptual, cognitive and motor tasks. Conversely, artificial intelligence attempts to design computational systems based on the tasks they will have to solve. In artificial neural networks, the three components specified by design are the objective functions, the learning rules and the architectures. With the growing success of deep learning, which utilizes brain-inspired architectures, these three designed components have increasingly become central to how we model, engineer and optimize complex artificial learning systems. Here we argue that a greater focus on these components would also benefit systems neuroscience. We give examples of how this optimization-based framework can drive theoretical and experimental progress in neuroscience. We contend that this principled perspective on systems neuroscience will help to generate more rapid progress.

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Year:  2019        PMID: 31659335      PMCID: PMC7115933          DOI: 10.1038/s41593-019-0520-2

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  59 in total

Review 1.  Central pattern generators and the control of rhythmic movements.

Authors:  E Marder; D Bucher
Journal:  Curr Biol       Date:  2001-11-27       Impact factor: 10.834

2.  Pyramidal neuron as two-layer neural network.

Authors:  Panayiota Poirazi; Terrence Brannon; Bartlett W Mel
Journal:  Neuron       Date:  2003-03-27       Impact factor: 17.173

Review 3.  Using goal-driven deep learning models to understand sensory cortex.

Authors:  Daniel L K Yamins; James J DiCarlo
Journal:  Nat Neurosci       Date:  2016-03       Impact factor: 24.884

Review 4.  The vestibular system: multimodal integration and encoding of self-motion for motor control.

Authors:  Kathleen E Cullen
Journal:  Trends Neurosci       Date:  2012-01-12       Impact factor: 13.837

Review 5.  Cognitive computational neuroscience.

Authors:  Nikolaus Kriegeskorte; Pamela K Douglas
Journal:  Nat Neurosci       Date:  2018-08-20       Impact factor: 24.884

6.  DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.

Authors:  Alexander Mathis; Pranav Mamidanna; Kevin M Cury; Taiga Abe; Venkatesh N Murthy; Mackenzie Weygandt Mathis; Matthias Bethge
Journal:  Nat Neurosci       Date:  2018-08-20       Impact factor: 24.884

Review 7.  Reinforcement Learning, Fast and Slow.

Authors:  Matthew Botvinick; Sam Ritter; Jane X Wang; Zeb Kurth-Nelson; Charles Blundell; Demis Hassabis
Journal:  Trends Cogn Sci       Date:  2019-04-16       Impact factor: 20.229

8.  Place cells and silent cells in the hippocampus of freely-behaving rats.

Authors:  L T Thompson; P J Best
Journal:  J Neurosci       Date:  1989-07       Impact factor: 6.167

9.  Space-time wiring specificity supports direction selectivity in the retina.

Authors:  Jinseop S Kim; Matthew J Greene; Aleksandar Zlateski; Kisuk Lee; Mark Richardson; Srinivas C Turaga; Michael Purcaro; Matthew Balkam; Amy Robinson; Bardia F Behabadi; Michael Campos; Winfried Denk; H Sebastian Seung
Journal:  Nature       Date:  2014-05-04       Impact factor: 49.962

Review 10.  Challenges and opportunities for large-scale electrophysiology with Neuropixels probes.

Authors:  Nicholas A Steinmetz; Christof Koch; Kenneth D Harris; Matteo Carandini
Journal:  Curr Opin Neurobiol       Date:  2018-02-13       Impact factor: 6.627

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  92 in total

1.  A goal-driven modular neural network predicts parietofrontal neural dynamics during grasping.

Authors:  Jonathan A Michaels; Stefan Schaffelhofer; Andres Agudelo-Toro; Hansjörg Scherberger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

2.  Can the Brain Do Backpropagation? -Exact Implementation of Backpropagation in Predictive Coding Networks.

Authors:  Yuhang Song; Thomas Lukasiewicz; Zhenghua Xu; Rafal Bogacz
Journal:  Adv Neural Inf Process Syst       Date:  2020

Review 3.  Reevaluating the Role of Persistent Neural Activity in Short-Term Memory.

Authors:  Nicolas Y Masse; Matthew C Rosen; David J Freedman
Journal:  Trends Cogn Sci       Date:  2020-01-29       Impact factor: 20.229

Review 4.  Direct Fit to Nature: An Evolutionary Perspective on Biological and Artificial Neural Networks.

Authors:  Uri Hasson; Samuel A Nastase; Ariel Goldstein
Journal:  Neuron       Date:  2020-02-05       Impact factor: 17.173

Review 5.  If deep learning is the answer, what is the question?

Authors:  Andrew Saxe; Stephanie Nelli; Christopher Summerfield
Journal:  Nat Rev Neurosci       Date:  2020-11-16       Impact factor: 34.870

6.  Supervised learning through physical changes in a mechanical system.

Authors:  Menachem Stern; Chukwunonso Arinze; Leron Perez; Stephanie E Palmer; Arvind Murugan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-16       Impact factor: 11.205

Review 7.  Illuminating dendritic function with computational models.

Authors:  Panayiota Poirazi; Athanasia Papoutsi
Journal:  Nat Rev Neurosci       Date:  2020-05-11       Impact factor: 34.870

Review 8.  Cortical hierarchy, dual counterstream architecture and the importance of top-down generative networks.

Authors:  Julien Vezoli; Loïc Magrou; Rainer Goebel; Xiao-Jing Wang; Kenneth Knoblauch; Martin Vinck; Henry Kennedy
Journal:  Neuroimage       Date:  2020-10-21       Impact factor: 6.556

Review 9.  Biological constraints on neural network models of cognitive function.

Authors:  Friedemann Pulvermüller; Rosario Tomasello; Malte R Henningsen-Schomers; Thomas Wennekers
Journal:  Nat Rev Neurosci       Date:  2021-06-28       Impact factor: 34.870

Review 10.  Computational models link cellular mechanisms of neuromodulation to large-scale neural dynamics.

Authors:  James M Shine; Eli J Müller; Brandon Munn; Joana Cabral; Rosalyn J Moran; Michael Breakspear
Journal:  Nat Neurosci       Date:  2021-05-06       Impact factor: 24.884

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