Literature DB >> 31650580

Detecting associations between intact connectomes and clinical covariates using recursive partitioning object-oriented data analysis.

Dake Yang1, Elena Deych1, Berkley Shands1, Meghan C Campbell2, Joel S Perlmutter2, Steve Petersen2, Bradley L Schlaggar3, William Shannon1,2.   

Abstract

Many neuroscientists are interested in how connectomes (graphical representations of functional connectivity between areas of the brain) change in relation to covariates. In statistics, changes like this are analyzed using regression, where the outcomes or dependent variables are regressed onto the covariates. However, when the outcome is a complex object, such as connectome graphs, classical regression models cannot be used. The regression approach developed here to work with complex graph outcomes combines recursive partitioning with the Gibbs distribution. We will only discuss the application to connectomes, but the method is generally applicable to any graphical outcome. The method, called Gibbs-RPart, partitions the covariate space into a set of nonoverlapping regions such that the connectomes within regions are more similar than they are to the connectomes in other regions. This paper extends the object-oriented data analysis paradigm for graph-valued data based on the Gibbs distribution, which we have applied previously to hypothesis testing to compare populations of connectomes from distinct groups (see the work of La Rosa et al).
© 2019 John Wiley & Sons, Ltd.

Entities:  

Keywords:  connectome; object-oriented data analysis; recursive partitioning; regression

Mesh:

Year:  2019        PMID: 31650580      PMCID: PMC7066597          DOI: 10.1002/sim.8374

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  15 in total

1.  Tree-based recursive partitioning methods for subdividing sibpairs into relatively more homogeneous subgroups.

Authors:  W D Shannon; M A Province; D C Rao
Journal:  Genet Epidemiol       Date:  2001-04       Impact factor: 2.135

2.  Gibbs distribution for statistical analysis of graphical data with a sample application to fcMRI brain images.

Authors:  Patricio S La Rosa; Terrence L Brooks; Elena Deych; Berkley Shands; Fred Prior; Linda J Larson-Prior; William D Shannon
Journal:  Stat Med       Date:  2015-11-25       Impact factor: 2.373

3.  Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers.

Authors:  V J Wedeen; R P Wang; J D Schmahmann; T Benner; W Y I Tseng; G Dai; D N Pandya; P Hagmann; H D'Arceuil; A J de Crespigny
Journal:  Neuroimage       Date:  2008-04-08       Impact factor: 6.556

Review 4.  Overview of object oriented data analysis.

Authors:  J Steve Marron; Andrés M Alonso
Journal:  Biom J       Date:  2014-01-13       Impact factor: 2.207

5.  Regression and recursive partition strategies in the analysis of medical survival data.

Authors:  A Ciampi; J F Lawless; S M McKinney; K Singhal
Journal:  J Clin Epidemiol       Date:  1988       Impact factor: 6.437

Review 6.  The development of human functional brain networks.

Authors:  Jonathan D Power; Damien A Fair; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuron       Date:  2010-09-09       Impact factor: 17.173

7.  Analyzing complex functional brain networks: Fusing statistics and network science to understand the brain*†

Authors:  Sean L Simpson; F DuBois Bowman; Paul J Laurienti
Journal:  Stat Surv       Date:  2013

Review 8.  The human connectome: A structural description of the human brain.

Authors:  Olaf Sporns; Giulio Tononi; Rolf Kötter
Journal:  PLoS Comput Biol       Date:  2005-09       Impact factor: 4.475

9.  Statistical object data analysis of taxonomic trees from human microbiome data.

Authors:  Patricio S La Rosa; Berkley Shands; Elena Deych; Yanjiao Zhou; Erica Sodergren; George Weinstock; William D Shannon
Journal:  PLoS One       Date:  2012-11-09       Impact factor: 3.240

10.  Mapping human whole-brain structural networks with diffusion MRI.

Authors:  Patric Hagmann; Maciej Kurant; Xavier Gigandet; Patrick Thiran; Van J Wedeen; Reto Meuli; Jean-Philippe Thiran
Journal:  PLoS One       Date:  2007-07-04       Impact factor: 3.240

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