Literature DB >> 31649139

Self-organization of parS centromeres by the ParB CTP hydrolase.

Young-Min Soh1, Iain Finley Davidson2, Stefano Zamuner3, Jérôme Basquin4, Florian Patrick Bock1, Michael Taschner1, Jan-Willem Veening1, Paolo De Los Rios3, Jan-Michael Peters2, Stephan Gruber5.   

Abstract

ParABS systems facilitate chromosome segregation and plasmid partitioning in bacteria and archaea. ParB protein binds centromeric parS DNA sequences and spreads to flanking DNA. We show that ParB is an enzyme that hydrolyzes cytidine triphosphate (CTP) to cytidine diphosphate (CDP). parS DNA stimulates cooperative CTP binding by ParB and CTP hydrolysis. A nucleotide cocrystal structure elucidates the catalytic center of the dimerization-dependent ParB CTPase. Single-molecule imaging and biochemical assays recapitulate features of ParB spreading from parS in the presence but not absence of CTP. These findings suggest that centromeres assemble by self-loading of ParB DNA sliding clamps at parS ParB CTPase is not related to known nucleotide hydrolases and might be a promising target for developing new classes of antibiotics.
Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2019        PMID: 31649139      PMCID: PMC6927813          DOI: 10.1126/science.aay3965

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

1.  Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily.

Authors:  K P Hopfner; A Karcher; D S Shin; L Craig; L M Arthur; J P Carney; J A Tainer
Journal:  Cell       Date:  2000-06-23       Impact factor: 41.582

2.  Structural analysis of the chromosome segregation protein Spo0J from Thermus thermophilus.

Authors:  Thomas A Leonard; P Jonathan G Butler; Jan Löwe
Journal:  Mol Microbiol       Date:  2004-07       Impact factor: 3.501

3.  Identification and characterization of a bacterial chromosome partitioning site.

Authors:  D C Lin; A D Grossman
Journal:  Cell       Date:  1998-03-06       Impact factor: 41.582

4.  Coevolutionary Analysis of Protein Sequences for Molecular Modeling.

Authors:  Duccio Malinverni; Alessandro Barducci
Journal:  Methods Mol Biol       Date:  2019

5.  Reduction of cysteine sulfinic acid in peroxiredoxin by sulfiredoxin proceeds directly through a sulfinic phosphoryl ester intermediate.

Authors:  Thomas J Jönsson; Michael S Murray; Lynnette C Johnson; W Todd Lowther
Journal:  J Biol Chem       Date:  2008-06-24       Impact factor: 5.157

Review 6.  Subcellular Organization: A Critical Feature of Bacterial Cell Replication.

Authors:  Ivan V Surovtsev; Christine Jacobs-Wagner
Journal:  Cell       Date:  2018-03-08       Impact factor: 41.582

7.  The bacterial chromosome segregation protein Spo0J spreads along DNA from parS nucleation sites.

Authors:  Heath Murray; Henrique Ferreira; Jeff Errington
Journal:  Mol Microbiol       Date:  2006-09       Impact factor: 3.501

8.  ParB spreading requires DNA bridging.

Authors:  Thomas G W Graham; Xindan Wang; Dan Song; Candice M Etson; Antoine M van Oijen; David Z Rudner; Joseph J Loparo
Journal:  Genes Dev       Date:  2014-05-14       Impact factor: 11.361

9.  A network of cis and trans interactions is required for ParB spreading.

Authors:  Dan Song; Kristen Rodrigues; Thomas G W Graham; Joseph J Loparo
Journal:  Nucleic Acids Res       Date:  2017-07-07       Impact factor: 16.971

10.  The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere.

Authors:  Gemma Lm Fisher; César L Pastrana; Victoria A Higman; Alan Koh; James A Taylor; Annika Butterer; Timothy Craggs; Frank Sobott; Heath Murray; Matthew P Crump; Fernando Moreno-Herrero; Mark S Dillingham
Journal:  Elife       Date:  2017-12-15       Impact factor: 8.140

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  30 in total

1.  Nonspecific DNA binding by P1 ParA determines the distribution of plasmid partition and repressor activities.

Authors:  Jamie C Baxter; William G Waples; Barbara E Funnell
Journal:  J Biol Chem       Date:  2020-10-14       Impact factor: 5.157

Review 2.  Compaction and control-the role of chromosome-organizing proteins in Streptomyces.

Authors:  Marcin J Szafran; Dagmara Jakimowicz; Marie A Elliot
Journal:  FEMS Microbiol Rev       Date:  2020-11-24       Impact factor: 16.408

3.  A CTP-dependent gating mechanism enables ParB spreading on DNA.

Authors:  Adam Sb Jalal; Ngat T Tran; Clare Em Stevenson; Afroze Chimthanawala; Anjana Badrinarayanan; David M Lawson; Tung Bk Le
Journal:  Elife       Date:  2021-08-16       Impact factor: 8.140

4.  Turning coldspots into hotspots: targeted recruitment of axis protein Hop1 stimulates meiotic recombination in Saccharomyces cerevisiae.

Authors:  Anura Shodhan; Martin Xaver; David Wheeler; Michael Lichten
Journal:  Genetics       Date:  2022-08-30       Impact factor: 4.402

5.  Spatial control over near-critical-point operation ensures fidelity of ParABS-mediated DNA partition.

Authors:  Longhua Hu; Jérôme Rech; Jean-Yves Bouet; Jian Liu
Journal:  Biophys J       Date:  2021-08-19       Impact factor: 3.699

Review 6.  Mechanisms of Theta Plasmid Replication in Enterobacteria and Implications for Adaptation to Its Host.

Authors:  Jay W Kim; Vega Bugata; Gerardo Cortés-Cortés; Giselle Quevedo-Martínez; Manel Camps
Journal:  EcoSal Plus       Date:  2020-11

Review 7.  The emergence of phase separation as an organizing principle in bacteria.

Authors:  Christopher A Azaldegui; Anthony G Vecchiarelli; Julie S Biteen
Journal:  Biophys J       Date:  2020-09-28       Impact factor: 4.033

8.  Enhancing Ristomycin A Production by Overexpression of ParB-Like StrR Family Regulators Controlling the Biosynthesis Genes.

Authors:  Kai Liu; Xin-Rui Hu; Li-Xing Zhao; Yemin Wang; Zixin Deng; Meifeng Tao
Journal:  Appl Environ Microbiol       Date:  2021-09-10       Impact factor: 4.792

9.  CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS.

Authors:  Francisco de Asis Balaguer; Clara Aicart-Ramos; Gemma Lm Fisher; Sara de Bragança; Eva M Martin-Cuevas; Cesar L Pastrana; Mark Simon Dillingham; Fernando Moreno-Herrero
Journal:  Elife       Date:  2021-07-12       Impact factor: 8.140

Review 10.  Mechanisms for Chromosome Segregation in Bacteria.

Authors:  Christos Gogou; Aleksandre Japaridze; Cees Dekker
Journal:  Front Microbiol       Date:  2021-06-16       Impact factor: 5.640

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