| Literature DB >> 31648514 |
Başak Filiz1, Mehmet Yıldırım1, Kuyaş Hekimler Öztürk2, Fevziye Burcu Şirin3, Seda Çelik3, İjlal Erturan1, Selma Korkmaz1, Hikmet Orhan4.
Abstract
Background/aim: IL-23R gene polymorphisms and the association of these polymorphisms with serum IL-23 levels were investigated in patients with psoriasis in the current study. Materials and methods: Sixty-seven patients with psoriasis who were admitted to our dermatology outpatient clinic and 67 healthy controls were included in the study. Polymorphisms of the IL-23R gene were determined by KASP-PCR method, and serum IL-23 levels were determined by ELISA method.Entities:
Keywords: Psoriasis; serum IL-23 levels; IL-23R gene polymorphisms
Mesh:
Substances:
Year: 2019 PMID: 31648514 PMCID: PMC7018327 DOI: 10.3906/sag-1904-48
Source DB: PubMed Journal: Turk J Med Sci ISSN: 1300-0144 Impact factor: 0.973
Polymerase chain reaction primers of selected single nucleotide polymorphisms (SNPs) with FAM and HEXfluorescentdyes.
| Allele ID | Primer allele(FAM) | Primer allele(HEX) | Allele(FAM) | Allele(HEX) |
| rs2201841 | GTAATAGGAAACTAATATAGAAGATGATGACT | AATAGGAAACTAATATAGAAGATGATGACC | A | G |
| rs11209026 | TTGATTGGGATATTTAACAGATCATTCCA | GGGATATTTAACAGATCATTCCG | A | G |
| rs7530511 | GGCAGCCTTGGAGTTCACC | ACTGGCAGCCTTGGAGTTCACT | C | T |
| rs11465804 | AGTATGATGGGTTAAAATGGGCAATTC | CAGTATGATGGGTTAAAATGGGCAATTA | G | T |
| rs1343152 | GATAAGAGGCAGAGTTTAATTCAA | CTGATAAGAGGCAGAGTTTAATTCAC | A | C |
Descriptive and comparison statistics of the demographic and clinical features of patients and controlsPASI: Psoriasis area severity index, SD: standard deviation, n: number.
| Patients (n = 67) | Controls (n = 67) | P | |
| Male/female, n (%) | 37/30 (55.2%) | 31/36 (46.3%) | 0.149 |
| Age, years, mean ± SD | 40.55 ± 14.83 | 36.00 ± 13.07 | 0.062 |
| Initial age of disease, mean ± SD | 31.72 ± 1.94 | - | |
| Duration of the disease, years, mean ± SD | 8.90 ± 0.93 | - | |
| PASI, mean ± SD PASI<10, n (%)PASI ≥10, n (%) | 10.49 ± 1.3444 (65.7)23 (34.3) | - | |
| Serum levels of IL-23, mean ± SD | 42.62 ± 5.96 | 75.76 ± 13.24 | 0.024 |
| Family history, n (%) | 21 (31.3) | ||
| Nail involvement, n (%) | 14 (20.8) | ||
| Psoriatic arthritis, n (%) | 1 (1.4) |
Genotype distributions of rs2201841, rs11209026, rs7530511, rs11465804, and rs1343152.HWE: Hardy–Weinberg equilibrium, n: number.
| Genotypes | Patients, n (%) | Controls, n (%) | P |
| rs2201841 | |||
| AA | 16 (26.7%) | 17 (28.4%) | 0.673 |
| GA | 29 (48.3%) | 32 (53.3%) | |
| GG | 15 (25%) | 11 (18.3%) | |
| HWE | 0.797 | 0.548 | 0.605 |
| rs11209026 | |||
| GG | 58 (96.7%) | 57 (93.4%) | 0.680 |
| GA | 2 (3.3%) | 4 (6.6%) | |
| AA | 0 | 0 | |
| HWE | 0.895 | 0.791 | 0.684 |
| rs7530511 | |||
| CC | 49 (81.7%) | 50 (82%) | 0.592 |
| TC | 10 (16.7%) | 11 (18%) | |
| TT | 1 (1.6%) | 0 | |
| HWE | 0.566 | 0.438 | 0.830 |
| rs11465804 | |||
| TT | 55 (91.7%) | 58 (95.1%) | 0.491 |
| TG | 5 (8.3%) | 3 (4.9%) | |
| GG | 0 | 0 | |
| HWE | 0.736 | 0.843 | 0.498 |
| rs1343152 | |||
| AA | 13 (21.7%) | 15 (25%) | 0.690 |
| CA | 30 (50%) | 32 (53.3%) | |
| CC | 17 (28.3%) | 13 (21.7%) | |
| HWE | 0.972 | 0.599 | 0.519 |
Relationship between genotypes and sex.n: Number.
| Alleles | Groups | Genotypes | Female, n (%) | Male, n (%) | P | |||||||||||||||||
| rs2201841 | Patients (n = 60) | AA | 3 (18.8) | 13 (81.3) | 0.021 | GA | 18 (62.1) | 11 (37.9) | GG | 7 (46.7) | 8 (53.3) | Controls (n = 60) | AA | 8 (47.1) | 9 (52.9) | 0.576 | GA | 20 (62.5) | 12 (37.5) | GG | 6 (54.5) | 5 (45.5) |
| rs11209026 | Patients (n = 60) | AA | - | - | 0.178 | GA | - | 2 (100.0) | GG | 28 (48.3) | 30 (51.7) | Controls (n = 61) | AA | - | - | 0.442 | GA | 3 (75.0) | 1 (25.0) | GG | 31 (54.4) | 26 (45.6) |
| rs7530511 | Patients (n = 60) | CC | 23 (46.9) | 26 (53.1) | 0.631 | TC | 5 (50.0) | 5 (50.0) | TT | - | 1 (100.0) | Controls (n = 61) | CC | 26 (52.0) | 24 (48.0) | 0.210 | TC | 8 (72.7) | 3 (27.3) | TT | - | - |
| rs11465804 | Patients (n = 60) | TT | 26 (47.3) | 29 (52.7) | 0.755 | TG | 2 (40.0) | 3 (60.0) | GG | - | - | Controls (n = 61) | TT | 32 (55.2) | 26 (44.8) | 0.696 | TG | 2 (66.7) | 1 (33.3) | GG | - | - |
| rs1343152 | Patients (n = 60) | AA | 2 (15.4) | 11 (84.6) | 0.027 | CA | 18 (60.0) | 12 (40.0) | CC | 8 (47.1) | 9 (52.9) | Controls (n = 60) | AA | 7 (46.7) | 8 (53.3) | 0.660 | CA | 19 (59.4) | 13 (40.6) | CC | 8 (61.5) | 5 (38.5) |
Relationship between genotypes and age and IL-23 levels.SD: Standard deviation, n: number.
| Alleles | Groups | Genotypes | n | Age, mean ± SD | P | IL-23 levels, mean ± SD | P |
| RS2201841 | Patients | AA | 16 | 40.19 ± 13.78 | 0.948 | 31.49 ± 35.44 | 0.184 |
| GA | 29 | 40.66 ± 16.39 | 53.57 ± 56.92 | ||||
| GG | 15 | 41.93 ± 15.45 | 28.67 ± 43.10 | ||||
| Controls | AA | 17 | 27.41 ± 8.73 | 0.657 | 72.25 ± 96.44 | 0.978 | |
| GA | 32 | 29.41 ± 8.97 | 75.94 ± 120.47 | ||||
| GG | 11 | 30.18 ± 7.49 | 81.42 ± 106.85 | ||||
| rs11209026 | Patients | GG | 58 | 40.38±15.24 | 0.201 | 41.11 ± 49.34 | 0.772 |
| GA | 2 | 54.50±10.61 | 51.55 ± 69.2 | ||||
| Controls | GG | 57 | 28.39 ± 8.42 | 0.138 | 79.09 ± 112.16 | 0.407 | |
| GA | 4 | 35.00±10.13 | 31.81 ± 15.40 | ||||
| rs7530511 | Patients | CC | 49 | 41.18 ± 15.40 | 0.916 | 43.10 ± 51.40 | 0.826 |
| TC | 10 | 39.70 ± 16.05 | 35.66 ± 42.32 | ||||
| TT | 1 | 36.00 | 19.28 | ||||
| Controls | CC | 50 | 28.82 ± 8.49 | 0.999 | 76.72 ± 113.75 | 0.912 | |
| TC | 11 | 28.82 ± 9.52 | 72.66 ± 89.10 | ||||
| rs11465804 | Patients | TT | 55 | 40.29 ± 15.61 | 0.351 | 41.35 ± 50.15 | 0.956 |
| TG | 5 | 47.00 ± 9.67 | 42.65 ± 44.83 | ||||
| Controls | TT | 58 | 28.62 ± 8.53 | 0.431 | 78.41 ± 111.29 | 0.450 | |
| TG | 3 | 32.67 ± 11.02 | 29.17 ± 17.72 | ||||
| rs1343152 | Patients | AA | 13 | 39.69 ± 15.13 | 0.733 | 32.31 ± 35.36 | 0.391 |
| CA | 30 | 39.93 ± 15.66 | 50.27 ± 56.72 | ||||
| CC | 17 | 43.35 ± 15.26 | 32.91 ± 43.96 | ||||
| Controls | AA | 15 | 27.20 ± 8.67 | 0.348 | 77.00 ± 102.00 | 0.955 | |
| CA | 32 | 28.66 ± 8.74 | 76.55 ± 120.24 | ||||
| CC | 13 | 31.85 ± 7.97 | 73.05 ± 99.79 |
Relationship between genotypes and PASI.PASI: Psoriasis Area Severity Index.
| Alleles | Genotypes | PASI <10, n (%) | PASI ≥10 n (%) | P | ||||||
| rs2201841 | AA | 11 (68.8) | 5 (31.3) | 0.976 | GA | 19 (65.5) | 10 (34.5) | GG | 10 (66.7) | 5 (33.3) |
| rs11209026 | AA | - | - | 0.309 | GA | 2 (100.0) | 0 (0.0) | GG | 38 (65.5) | 20 (34.5) |
| rs7530511 | CC | 33 (67.3) | 16 (32.7) | 0.357 | TC | 7 (70.0) | 3 (30.0) | TT | - | 1 (100.0) |
| rs11465804 | TT | 35 (63.6) | 20 (36.4) | 0.099 | TG | 5 (100.0) | 0 (0.0) | GG | - | - |
| rs1343152 | AA | 8 (61.5) | 5 (38.5) | 0.873 | CA | 20 (66.7) | 10 (33.3) | CC | 12 (70.6) | 5 (29.4) |
Distribution of alleles (rs2201841, rs11209026, rs7530511, rs11465804, rs1343152) by patient and control groups and test statistics.n: Number.
| Alleles | Patients, n (%) | Controls, n (%) | P |
| rs2201841 | |||
| Major allele (A) | 61 (48.03) | 66 (52.21) | 0.518 |
| Minor allele (G) | 59 (51.97) | 54 (47.79) | |
| rs11209026 | |||
| Major allele (G) | 118 (50) | 118 (50) | 0.420 |
| Minor allele (A) | 2 (33.33) | 4 (66.67) | |
| rs7530511 | |||
| Major allele (C) | 108 (49.2) | 111 (50.68) | 0.794 |
| Minor allele (T) | 12 (52.17) | 11 (47.83) | |
| rs11465804 | |||
| Major allele (T) | 115 (48.52) | 122 (51.48) | 0.437 |
| Minor allele (G) | 5 (62.50) | 3 (37.50) | |
| rs1343152 | |||
| Major allele (A) | 56 (47.46) | 62 (52.54) | 0.439 |
| Minor allele (C) | 64 (52.46) | 58 (47.54) |