Literature DB >> 31645299

Immunology Driven by Large-Scale Single-Cell Sequencing.

Tomás Gomes1, Sarah A Teichmann2, Carlos Talavera-López3.   

Abstract

The immune system encompasses a large degree of phenotypic diversity and plasticity in its cell types, and more is to be uncovered. We argue that large, multiomic datasets of single-cell resolution, in conjunction with improved computational methods, will be essential to resolving immune cell identity. Existing datasets, combined with 'big data' methodologies, can serve as a platform to support future studies in immunology. Technical and analytical advances in multiomics and spatial integration can provide a reference for gene regulation and cellular interactions in spatially structured tissue contexts. We posit that these developments may allow guided functional studies of immune cell populations and lay the groundwork for informed cell engineering and precision medicine.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Year:  2019        PMID: 31645299     DOI: 10.1016/j.it.2019.09.004

Source DB:  PubMed          Journal:  Trends Immunol        ISSN: 1471-4906            Impact factor:   16.687


  21 in total

Review 1.  Fate-mapping mice: new tools and technology for immune discovery.

Authors:  Scarlett E Lee; Brian D Rudd; Norah L Smith
Journal:  Trends Immunol       Date:  2022-01-31       Impact factor: 16.687

Review 2.  Single-cell atlases: shared and tissue-specific cell types across human organs.

Authors:  Rasa Elmentaite; Cecilia Domínguez Conde; Lu Yang; Sarah A Teichmann
Journal:  Nat Rev Genet       Date:  2022-02-25       Impact factor: 59.581

3.  Protocol for Creating Antibodies with Complex Fluorescence Spectra.

Authors:  Madeline E McCarthy; Caitlin M Anglin; Heather A Peer; Sevanna A Boleman; Stephanie R Klaubert; Marc R Birtwistle
Journal:  Bioconjug Chem       Date:  2021-05-19       Impact factor: 4.774

Review 4.  Multi-omics integration in biomedical research - A metabolomics-centric review.

Authors:  Maria A Wörheide; Jan Krumsiek; Gabi Kastenmüller; Matthias Arnold
Journal:  Anal Chim Acta       Date:  2020-10-22       Impact factor: 6.558

Review 5.  Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy.

Authors:  Satyen H Gohil; J Bryan Iorgulescu; David A Braun; Derin B Keskin; Kenneth J Livak
Journal:  Nat Rev Clin Oncol       Date:  2020-12-04       Impact factor: 66.675

Review 6.  Peptides that immunoactivate the tumor microenvironment.

Authors:  Natsuki Furukawa; Aleksander S Popel
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2020-12-01       Impact factor: 10.680

Review 7.  Advances of single-cell genomics and epigenomics in human disease: where are we now?

Authors:  Rizqah Kamies; Celia P Martinez-Jimenez
Journal:  Mamm Genome       Date:  2020-04-08       Impact factor: 2.957

8.  Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses.

Authors:  Maaike S A Jongen; Ben D MacArthur; Nicola A Englyst; Jonathan West
Journal:  Commun Biol       Date:  2020-06-04

9.  Integrated analysis of multimodal single-cell data.

Authors:  Yuhan Hao; Stephanie Hao; Erica Andersen-Nissen; William M Mauck; Shiwei Zheng; Andrew Butler; Maddie J Lee; Aaron J Wilk; Charlotte Darby; Michael Zager; Paul Hoffman; Marlon Stoeckius; Efthymia Papalexi; Eleni P Mimitou; Jaison Jain; Avi Srivastava; Tim Stuart; Lamar M Fleming; Bertrand Yeung; Angela J Rogers; Juliana M McElrath; Catherine A Blish; Raphael Gottardo; Peter Smibert; Rahul Satija
Journal:  Cell       Date:  2021-05-31       Impact factor: 41.582

Review 10.  The liver as an immunological barrier redefined by single-cell analysis.

Authors:  Zania Stamataki; Leo Swadling
Journal:  Immunology       Date:  2020-04-15       Impact factor: 7.215

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