| Literature DB >> 31636990 |
Josemaria S Soriano1, Bryan E Galeas1, Paul Garrett1, Ryan A Flores1, Juan L Pinedo1, Tsuyoshi A Kohlgruber2, Daniel Felton3, Pius O Adelani1.
Abstract
The title phospho-nate-based organic-inorganic hybrid framework, poly[bis(dimethylammonium) [(μ4-2,5-dihydroxybenzene-1,4-diphosphonato)zinc(II)]], {(C2H8N)2[Zn(C6H4O8P2)]} n , was formed unexpectedly when di-methyl-ammonium cations were formed from the in situ deca-rbonylation of the N,N-di-methyl-formamide solvent. The framework is built up from ZnO4 tetra-hedra and bridging di-phospho-nate tetra-anions to generate a three-dimensional network comprising [100] channels occupied by the (CH3)2NH2 + cations. Within the channels, an array of N-H⋯O hydrogen bonds help to establish the structure. In addition, intra-molecular O-H⋯O hydrogen bonds between the appended -OH groups of the phenyl ring and adjacent PO3 2- groups are observed. © Soriano et al. 2019.Entities:
Keywords: crystal structure; decarbonylation; hydrogen bonding; inorganic–organic hybrid framework; phosphonic acid
Year: 2019 PMID: 31636990 PMCID: PMC6775749 DOI: 10.1107/S2056989019012969
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of (I) in position 1 − x, 1 − y, 1 − z showing 50% displacement ellipsoids.
Figure 2View down [100] of the three-dimensional framework structure of (I) with the ZnO4 and PO3C moieties shown as polyhedra. Color key: ZnO4 groups = cyan, PO3C groups = magenta, oxygen = red, carbon = black, hydrogen = white. The (CH3)2NH2 + cations are omitted for clarity.
Figure 3Ball-and-stick representation of the structure of (I) viewed along the [001] axis. The hydrogen bonds involving the –OH groups are drawn as blue dashed lines. Color key as in Fig. 2 ▸.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O7—H7 | 0.79 (2) | 1.91 (2) | 2.6510 (17) | 156 (3) |
| O8—H8 | 0.87 (3) | 1.73 (3) | 2.5846 (18) | 168 (3) |
| N1—H1 | 0.89 (2) | 1.88 (2) | 2.7168 (19) | 155.2 (18) |
| N1—H1 | 0.89 (2) | 2.02 (2) | 2.8125 (19) | 148.3 (18) |
| N2—H2 | 0.83 (3) | 2.07 (3) | 2.8558 (19) | 158 (2) |
| N2—H2 | 1.03 (2) | 1.63 (2) | 2.6518 (18) | 173 (2) |
| C7—H7 | 0.91 (2) | 2.54 (2) | 3.443 (3) | 174 (2) |
| C9—H9 | 1.03 (3) | 2.57 (2) | 3.445 (3) | 142.6 (19) |
| C10—H10 | 0.92 (3) | 2.42 (3) | 3.236 (3) | 148 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Experimental details
| Crystal data | |
| Chemical formula | (C2H8N)2[Zn(C6H4O8P2)] |
|
| 423.59 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 220 |
|
| 8.8455 (5), 16.4492 (9), 11.2721 (6) |
| β (°) | 97.338 (1) |
|
| 1626.67 (15) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.75 |
| Crystal size (mm) | 0.09 × 0.03 × 0.03 |
| Data collection | |
| Diffractometer | Bruker APEXII |
| Absorption correction | Multi-scan ( |
|
| 0.706, 0.746 |
| No. of measured, independent and observed [ | 19692, 4040, 3582 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.681 |
| Refinement | |
|
| 0.022, 0.060, 1.05 |
| No. of reflections | 4040 |
| No. of parameters | 288 |
| No. of restraints | 1 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.42, −0.31 |
Computer programs: APEX3 and SAINT (Bruker, 2015 ▸), SHELXT2014/2 (Sheldrick, 2015a ▸), SHELXL2016/6 (Sheldrick, 2015b ▸), XP in SHELXTL (Sheldrick, 2008a ▸) and CIFTAB (Sheldrick, 2008b ▸).
| (C2H8N)2[Zn(C6H4O8P2)] | |
| Monoclinic, | Mo |
| Cell parameters from 8723 reflections | |
| θ = 2.2–28.8° | |
| µ = 1.75 mm−1 | |
| β = 97.338 (1)° | |
| Block, colorless | |
| 0.09 × 0.03 × 0.03 mm |
| Bruker APEXII diffractometer | 4040 independent reflections |
| Radiation source: Incoatec micro-focus | 3582 reflections with |
| Detector resolution: 8.33 pixels mm-1 | |
| combination of ω and φ–scans | θmax = 29.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Krause | |
| 19692 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| All H-atom parameters refined | |
| 4040 reflections | (Δ/σ)max = 0.002 |
| 288 parameters | Δρmax = 0.42 e Å−3 |
| 1 restraint | Δρmin = −0.31 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Zn1 | 0.73693 (2) | 0.50748 (2) | −0.00920 (2) | 0.01208 (6) | |
| P1 | 0.53496 (4) | 0.52463 (2) | 0.21300 (3) | 0.01348 (9) | |
| P2 | 0.52017 (4) | 0.86078 (2) | 0.50529 (3) | 0.01240 (8) | |
| O1 | 0.61568 (13) | 0.54669 (7) | 0.10670 (10) | 0.0251 (3) | |
| O2 | 0.61879 (14) | 0.46378 (7) | 0.29864 (11) | 0.0241 (3) | |
| O3 | 0.37005 (12) | 0.49818 (6) | 0.17307 (10) | 0.0173 (2) | |
| O4 | 0.66080 (13) | 0.90494 (6) | 0.47282 (10) | 0.0217 (2) | |
| O5 | 0.37382 (13) | 0.90513 (7) | 0.45507 (10) | 0.0220 (2) | |
| O6 | 0.53036 (13) | 0.84096 (7) | 0.63713 (9) | 0.0216 (2) | |
| O7 | 0.31114 (15) | 0.80860 (7) | 0.26689 (12) | 0.0287 (3) | |
| O8 | 0.71416 (17) | 0.57148 (8) | 0.45775 (13) | 0.0382 (4) | |
| C1 | 0.52417 (16) | 0.61778 (9) | 0.29782 (13) | 0.0137 (3) | |
| C2 | 0.42525 (17) | 0.67996 (9) | 0.25376 (13) | 0.0161 (3) | |
| C3 | 0.41615 (17) | 0.75253 (9) | 0.31601 (13) | 0.0155 (3) | |
| C4 | 0.51147 (16) | 0.76540 (8) | 0.42426 (13) | 0.0128 (3) | |
| C5 | 0.60872 (17) | 0.70290 (9) | 0.46917 (14) | 0.0176 (3) | |
| C6 | 0.61546 (17) | 0.62969 (9) | 0.40804 (14) | 0.0186 (3) | |
| C7 | 0.5494 (3) | 0.29794 (13) | 0.13241 (19) | 0.0387 (5) | |
| N1 | 0.57872 (18) | 0.30131 (9) | 0.26452 (15) | 0.0277 (3) | |
| C8 | 0.7362 (3) | 0.27776 (15) | 0.3120 (2) | 0.0443 (5) | |
| C9 | 0.5188 (3) | 1.01513 (14) | 0.8070 (2) | 0.0356 (4) | |
| N2 | 0.63088 (18) | 0.94927 (9) | 0.80290 (13) | 0.0246 (3) | |
| C10 | 0.6615 (3) | 0.90359 (13) | 0.91563 (18) | 0.0371 (5) | |
| H1A | 0.568 (2) | 0.3527 (14) | 0.287 (2) | 0.038 (6)* | |
| H1B | 0.515 (2) | 0.2695 (14) | 0.2980 (19) | 0.037 (6)* | |
| H2A | 0.360 (2) | 0.6731 (12) | 0.1787 (17) | 0.026 (5)* | |
| H2B | 0.709 (3) | 0.9705 (14) | 0.783 (2) | 0.041 (6)* | |
| H2C | 0.588 (3) | 0.9111 (15) | 0.735 (2) | 0.054 (7)* | |
| H5A | 0.676 (2) | 0.7101 (11) | 0.5433 (17) | 0.024 (5)* | |
| H7A | 0.306 (3) | 0.8427 (16) | 0.316 (2) | 0.050 (7)* | |
| H7B | 0.450 (3) | 0.3113 (17) | 0.109 (2) | 0.071 (9)* | |
| H7C | 0.620 (2) | 0.3284 (16) | 0.101 (2) | 0.055 (7)* | |
| H7D | 0.566 (3) | 0.2430 (15) | 0.109 (2) | 0.044 (6)* | |
| H8A | 0.691 (3) | 0.5308 (18) | 0.410 (3) | 0.064 (8)* | |
| H8B | 0.806 (3) | 0.3177 (15) | 0.281 (2) | 0.052 (7)* | |
| H8C | 0.750 (3) | 0.2805 (15) | 0.402 (2) | 0.053 (7)* | |
| H8D | 0.748 (3) | 0.2232 (16) | 0.278 (2) | 0.056 (7)* | |
| H9A | 0.501 (2) | 1.0337 (13) | 0.729 (2) | 0.036 (6)* | |
| H9B | 0.569 (3) | 1.0562 (16) | 0.869 (2) | 0.054 (7)* | |
| H9C | 0.431 (3) | 0.9924 (13) | 0.828 (2) | 0.042 (7)* | |
| H10A | 0.719 (4) | 0.936 (2) | 0.970 (3) | 0.088 (11)* | |
| H10B | 0.564 (4) | 0.8940 (17) | 0.947 (3) | 0.077 (9)* | |
| H10C | 0.716 (3) | 0.8557 (17) | 0.902 (2) | 0.062 (8)* |
| Zn1 | 0.01243 (9) | 0.01005 (9) | 0.01414 (9) | −0.00104 (6) | 0.00319 (6) | −0.00073 (6) |
| P1 | 0.01327 (18) | 0.01165 (17) | 0.01539 (18) | 0.00072 (13) | 0.00134 (14) | −0.00453 (14) |
| P2 | 0.01391 (18) | 0.00907 (17) | 0.01421 (18) | 0.00096 (13) | 0.00174 (14) | −0.00254 (13) |
| O1 | 0.0271 (6) | 0.0243 (6) | 0.0268 (6) | −0.0033 (5) | 0.0146 (5) | −0.0084 (5) |
| O2 | 0.0287 (6) | 0.0141 (5) | 0.0268 (6) | 0.0053 (5) | −0.0070 (5) | −0.0053 (5) |
| O3 | 0.0153 (5) | 0.0196 (5) | 0.0167 (5) | −0.0027 (4) | 0.0006 (4) | −0.0046 (4) |
| O4 | 0.0219 (6) | 0.0142 (5) | 0.0302 (6) | −0.0051 (4) | 0.0085 (5) | −0.0057 (4) |
| O5 | 0.0210 (6) | 0.0185 (5) | 0.0253 (6) | 0.0094 (4) | −0.0018 (5) | −0.0068 (5) |
| O6 | 0.0331 (6) | 0.0162 (5) | 0.0152 (5) | −0.0024 (5) | 0.0023 (5) | −0.0024 (4) |
| O7 | 0.0350 (7) | 0.0169 (6) | 0.0293 (7) | 0.0113 (5) | −0.0149 (5) | −0.0073 (5) |
| O8 | 0.0463 (8) | 0.0237 (7) | 0.0367 (8) | 0.0212 (6) | −0.0249 (6) | −0.0140 (6) |
| C1 | 0.0132 (7) | 0.0125 (7) | 0.0156 (7) | 0.0004 (5) | 0.0019 (5) | −0.0032 (5) |
| C2 | 0.0177 (7) | 0.0144 (7) | 0.0152 (7) | −0.0005 (6) | −0.0020 (6) | −0.0025 (6) |
| C3 | 0.0158 (7) | 0.0123 (6) | 0.0176 (7) | 0.0023 (5) | −0.0005 (6) | 0.0002 (5) |
| C4 | 0.0142 (7) | 0.0105 (6) | 0.0141 (7) | −0.0008 (5) | 0.0029 (5) | −0.0016 (5) |
| C5 | 0.0184 (7) | 0.0160 (7) | 0.0168 (7) | 0.0018 (6) | −0.0032 (6) | −0.0032 (6) |
| C6 | 0.0192 (7) | 0.0147 (7) | 0.0207 (8) | 0.0062 (6) | −0.0028 (6) | −0.0032 (6) |
| C7 | 0.0482 (13) | 0.0331 (11) | 0.0375 (11) | −0.0098 (10) | 0.0162 (10) | −0.0045 (9) |
| N1 | 0.0312 (8) | 0.0175 (7) | 0.0373 (9) | −0.0035 (6) | 0.0154 (7) | −0.0030 (6) |
| C8 | 0.0363 (11) | 0.0374 (12) | 0.0601 (16) | 0.0052 (9) | 0.0091 (11) | −0.0063 (11) |
| C9 | 0.0353 (11) | 0.0405 (11) | 0.0326 (11) | 0.0034 (9) | 0.0096 (9) | 0.0022 (9) |
| N2 | 0.0254 (8) | 0.0297 (8) | 0.0202 (7) | −0.0096 (6) | 0.0087 (6) | −0.0050 (6) |
| C10 | 0.0577 (14) | 0.0300 (10) | 0.0236 (9) | 0.0000 (10) | 0.0052 (9) | −0.0045 (8) |
| Zn1—O1 | 1.9055 (11) | C5—C6 | 1.392 (2) |
| Zn1—O3i | 1.9671 (11) | C5—H5A | 0.971 (19) |
| Zn1—O4ii | 1.9330 (11) | C7—N1 | 1.480 (3) |
| Zn1—O5iii | 1.9543 (10) | C7—H7B | 0.92 (2) |
| P1—O1 | 1.5151 (12) | C7—H7C | 0.91 (2) |
| P1—O2 | 1.5169 (12) | C7—H7D | 0.96 (2) |
| P1—O3 | 1.5337 (11) | N1—C8 | 1.479 (3) |
| P1—C1 | 1.8150 (14) | N1—H1A | 0.89 (2) |
| P2—O6 | 1.5129 (11) | N1—H1B | 0.89 (2) |
| P2—O4 | 1.5249 (11) | C8—H8B | 1.00 (3) |
| P2—O5 | 1.5301 (11) | C8—H8C | 1.01 (3) |
| P2—C4 | 1.8121 (14) | C8—H8D | 0.98 (3) |
| O7—C3 | 1.3743 (18) | C9—N2 | 1.473 (3) |
| O7—H7A | 0.79 (3) | C9—H9A | 0.92 (2) |
| O8—C6 | 1.3668 (19) | C9—H9B | 1.03 (3) |
| O8—H8A | 0.86 (3) | C9—H9C | 0.92 (3) |
| C1—C2 | 1.395 (2) | N2—C10 | 1.471 (2) |
| C1—C6 | 1.406 (2) | N2—H2B | 0.83 (2) |
| C2—C3 | 1.392 (2) | N2—H2C | 1.02 (3) |
| C2—H2A | 0.968 (19) | C10—H10A | 0.92 (4) |
| C3—C4 | 1.408 (2) | C10—H10B | 0.98 (3) |
| C4—C5 | 1.394 (2) | C10—H10C | 0.95 (3) |
| O1—Zn1—O4ii | 116.04 (5) | O8—C6—C5 | 117.94 (14) |
| O1—Zn1—O5iii | 108.06 (5) | O8—C6—C1 | 121.95 (13) |
| O4ii—Zn1—O5iii | 113.58 (5) | C5—C6—C1 | 120.11 (13) |
| O1—Zn1—O3i | 114.48 (5) | N1—C7—H7B | 108.8 (17) |
| O4ii—Zn1—O3i | 108.30 (5) | N1—C7—H7C | 109.5 (15) |
| O5iii—Zn1—O3i | 94.45 (4) | H7B—C7—H7C | 116 (2) |
| O1—P1—O2 | 114.83 (7) | N1—C7—H7D | 107.5 (14) |
| O1—P1—O3 | 111.25 (7) | H7B—C7—H7D | 109 (2) |
| O2—P1—O3 | 111.65 (7) | H7C—C7—H7D | 106 (2) |
| O1—P1—C1 | 106.03 (7) | C8—N1—C7 | 112.97 (17) |
| O2—P1—C1 | 106.03 (7) | C8—N1—H1A | 106.0 (14) |
| O3—P1—C1 | 106.38 (6) | C7—N1—H1A | 107.9 (14) |
| O6—P2—O4 | 112.98 (7) | C8—N1—H1B | 108.3 (14) |
| O6—P2—O5 | 114.05 (7) | C7—N1—H1B | 111.4 (14) |
| O4—P2—O5 | 111.20 (7) | H1A—N1—H1B | 110 (2) |
| O6—P2—C4 | 107.57 (6) | N1—C8—H8B | 107.3 (14) |
| O4—P2—C4 | 105.95 (6) | N1—C8—H8C | 110.0 (14) |
| O5—P2—C4 | 104.29 (6) | H8B—C8—H8C | 109 (2) |
| P1—O1—Zn1 | 145.53 (8) | N1—C8—H8D | 104.0 (15) |
| P1—O3—Zn1i | 127.91 (7) | H8B—C8—H8D | 111 (2) |
| P2—O4—Zn1iv | 137.62 (7) | H8C—C8—H8D | 115 (2) |
| P2—O5—Zn1v | 142.34 (7) | N2—C9—H9A | 104.4 (14) |
| C3—O7—H7A | 107.0 (18) | N2—C9—H9B | 105.8 (14) |
| C6—O8—H8A | 101.6 (19) | H9A—C9—H9B | 116 (2) |
| C2—C1—C6 | 118.38 (13) | N2—C9—H9C | 107.6 (14) |
| C2—C1—P1 | 120.27 (11) | H9A—C9—H9C | 109 (2) |
| C6—C1—P1 | 121.34 (11) | H9B—C9—H9C | 113 (2) |
| C3—C2—C1 | 121.54 (14) | C10—N2—C9 | 113.51 (16) |
| C3—C2—H2A | 118.3 (11) | C10—N2—H2B | 112.3 (17) |
| C1—C2—H2A | 120.1 (11) | C9—N2—H2B | 106.7 (16) |
| O7—C3—C2 | 116.88 (13) | C10—N2—H2C | 110.0 (14) |
| O7—C3—C4 | 123.19 (13) | C9—N2—H2C | 106.8 (14) |
| C2—C3—C4 | 119.93 (13) | H2B—N2—H2C | 107 (2) |
| C5—C4—C3 | 118.52 (13) | N2—C10—H10A | 108 (2) |
| C5—C4—P2 | 118.11 (11) | N2—C10—H10B | 108.4 (17) |
| C3—C4—P2 | 123.32 (11) | H10A—C10—H10B | 107 (2) |
| C6—C5—C4 | 121.45 (14) | N2—C10—H10C | 109.3 (16) |
| C6—C5—H5A | 118.1 (11) | H10A—C10—H10C | 110 (3) |
| C4—C5—H5A | 120.4 (11) | H10B—C10—H10C | 114 (2) |
| O2—P1—O1—Zn1 | 37.88 (16) | C1—C2—C3—O7 | −177.72 (14) |
| O3—P1—O1—Zn1 | −90.15 (14) | C1—C2—C3—C4 | 2.0 (2) |
| C1—P1—O1—Zn1 | 154.59 (13) | O7—C3—C4—C5 | 176.85 (14) |
| O1—P1—O3—Zn1i | −0.87 (10) | C2—C3—C4—C5 | −2.8 (2) |
| O2—P1—O3—Zn1i | −130.59 (8) | O7—C3—C4—P2 | −5.8 (2) |
| C1—P1—O3—Zn1i | 114.17 (8) | C2—C3—C4—P2 | 174.51 (11) |
| O6—P2—O4—Zn1iv | −63.56 (12) | O6—P2—C4—C5 | −43.03 (13) |
| O5—P2—O4—Zn1iv | 66.18 (12) | O4—P2—C4—C5 | 78.06 (13) |
| C4—P2—O4—Zn1iv | 178.91 (10) | O5—P2—C4—C5 | −164.49 (12) |
| O6—P2—O5—Zn1v | 43.33 (14) | O6—P2—C4—C3 | 139.65 (13) |
| O4—P2—O5—Zn1v | −85.85 (13) | O4—P2—C4—C3 | −99.26 (13) |
| C4—P2—O5—Zn1v | 160.39 (11) | O5—P2—C4—C3 | 18.19 (14) |
| O1—P1—C1—C2 | 71.83 (13) | C3—C4—C5—C6 | 1.5 (2) |
| O2—P1—C1—C2 | −165.68 (12) | P2—C4—C5—C6 | −175.95 (12) |
| O3—P1—C1—C2 | −46.70 (14) | C4—C5—C6—O8 | 179.76 (15) |
| O1—P1—C1—C6 | −107.45 (13) | C4—C5—C6—C1 | 0.7 (2) |
| O2—P1—C1—C6 | 15.04 (15) | C2—C1—C6—O8 | 179.40 (15) |
| O3—P1—C1—C6 | 134.02 (13) | P1—C1—C6—O8 | −1.3 (2) |
| C6—C1—C2—C3 | 0.2 (2) | C2—C1—C6—C5 | −1.6 (2) |
| P1—C1—C2—C3 | −179.06 (12) | P1—C1—C6—C5 | 177.73 (12) |
| H··· | ||||
| O7—H7 | 0.79 (2) | 1.91 (2) | 2.6510 (17) | 156 (3) |
| O8—H8 | 0.87 (3) | 1.73 (3) | 2.5846 (18) | 168 (3) |
| N1—H1 | 0.89 (2) | 1.88 (2) | 2.7168 (19) | 155.2 (18) |
| N1—H1 | 0.89 (2) | 2.02 (2) | 2.8125 (19) | 148.3 (18) |
| N2—H2 | 0.83 (3) | 2.07 (3) | 2.8558 (19) | 158 (2) |
| N2—H2 | 1.03 (2) | 1.63 (2) | 2.6518 (18) | 173 (2) |
| C7—H7 | 0.91 (2) | 2.54 (2) | 3.443 (3) | 174 (2) |
| C9—H9 | 1.03 (3) | 2.57 (2) | 3.445 (3) | 142.6 (19) |
| C10—H10 | 0.92 (3) | 2.42 (3) | 3.236 (3) | 148 (3) |