Literature DB >> 31633999

Applying Data Warehousing to a Phase III Clinical Trial From the Fondazione Italiana Linfomi Ensures Superior Data Quality and Improved Assessment of Clinical Outcomes.

Gian Maria Zaccaria1, Simone Ferrero1, Samanta Rosati2, Marco Ghislieri2, Elisa Genuardi1, Andrea Evangelista3, Rebecca Sandrone2, Cristina Castagneri2, Daniela Barbero1, Mariella Lo Schirico4, Luca Arcaini5, Anna Lia Molinari6, Filippo Ballerini7, Andres Ferreri8, Paola Omedè1, Alberto Zamò1, Gabriella Balestra2, Mario Boccadoro1, Sergio Cortelazzo9, Marco Ladetto10.   

Abstract

PURPOSE: Data collection in clinical trials is becoming complex, with a huge number of variables that need to be recorded, verified, and analyzed to effectively measure clinical outcomes. In this study, we used data warehouse (DW) concepts to achieve this goal. A DW was developed to accommodate data from a large clinical trial, including all the characteristics collected. We present the results related to baseline variables with the following objectives: developing a data quality (DQ) control strategy and improving outcome analysis according to the clinical trial primary end points.
METHODS: Data were retrieved from the electronic case reporting forms (eCRFs) of the phase III, multicenter MCL0208 trial (ClinicalTrials.gov identifier: NCT02354313) of the Fondazione Italiana Linfomi for younger patients with untreated mantle cell lymphoma (MCL). The DW was created with a relational database management system. Recommended DQ dimensions were observed to monitor the activity of each site to handle DQ management during patient follow-up. The DQ management was applied to clinically relevant parameters that predicted progression-free survival to assess its impact.
RESULTS: The DW encompassed 16 tables, which included 226 variables for 300 patients and 199,500 items of data. The tool allowed cross-comparison analysis and detected some incongruities in eCRFs, prompting queries to clinical centers. This had an impact on clinical end points, as the DQ control strategy was able to improve the prognostic stratification according to single parameters, such as tumor infiltration by flow cytometry, and even using established prognosticators, such as the MCL International Prognostic Index.
CONCLUSION: The DW is a powerful tool to organize results from large phase III clinical trials and to effectively improve DQ through the application of effective engineered tools.

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Year:  2019        PMID: 31633999      PMCID: PMC6873907          DOI: 10.1200/CCI.19.00049

Source DB:  PubMed          Journal:  JCO Clin Cancer Inform        ISSN: 2473-4276


  28 in total

1.  The Influence of handling censored data on estimating progression-free survival in cancer clinical trials (JCOG9913-A).

Authors:  Miyuki Niimi; Seiichiro Yamamoto; Haruhiko Fukuda; Naoki Ishizuka; Hideyuki Akaza
Journal:  Jpn J Clin Oncol       Date:  2002-01       Impact factor: 3.019

2.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
Journal:  J Biomed Inform       Date:  2008-09-30       Impact factor: 6.317

3.  A pragmatic method for transforming clinical research data from the research electronic data capture "REDCap" to Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM): Development and evaluation of REDCap2SDTM.

Authors:  Keiichi Yamamoto; Keiko Ota; Ippei Akiya; Ayumi Shintani
Journal:  J Biomed Inform       Date:  2017-05-06       Impact factor: 6.317

4.  A practical framework for data management processes and their evaluation in population-based medical registries.

Authors:  M Sariyar; A Borg; O Heidinger; K Pommerening
Journal:  Inform Health Soc Care       Date:  2013-01-16       Impact factor: 2.439

5.  Evaluating common data models for use with a longitudinal community registry.

Authors:  Maryam Garza; Guilherme Del Fiol; Jessica Tenenbaum; Anita Walden; Meredith Nahm Zozus
Journal:  J Biomed Inform       Date:  2016-10-29       Impact factor: 6.317

Review 6.  Clinical Data Warehouse: An Effective Tool to Create Intelligence in Disease Management.

Authors:  Mahtab Karami; Azin Rahimi; Ali Hosseini Shahmirzadi
Journal:  Health Care Manag (Frederick)       Date:  2017 Oct/Dec

7.  A new prognostic index (MIPI) for patients with advanced-stage mantle cell lymphoma.

Authors:  Eva Hoster; Martin Dreyling; Wolfram Klapper; Christian Gisselbrecht; Achiel van Hoof; Hanneke C Kluin-Nelemans; Michael Pfreundschuh; Marcel Reiser; Bernd Metzner; Hermann Einsele; Norma Peter; Wolfram Jung; Bernhard Wörmann; Wolf-Dieter Ludwig; Ulrich Dührsen; Hartmut Eimermacher; Hannes Wandt; Joerg Hasford; Wolfgang Hiddemann; Michael Unterhalt
Journal:  Blood       Date:  2007-10-25       Impact factor: 22.113

Review 8.  Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research.

Authors:  Nicole Gray Weiskopf; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2012-06-25       Impact factor: 4.497

9.  Combining information from a clinical data warehouse and a pharmaceutical database to generate a framework to detect comorbidities in electronic health records.

Authors:  Emmanuelle Sylvestre; Guillaume Bouzillé; Emmanuel Chazard; Cécil His-Mahier; Christine Riou; Marc Cuggia
Journal:  BMC Med Inform Decis Mak       Date:  2018-01-24       Impact factor: 2.796

10.  A Data Quality Assessment Guideline for Electronic Health Record Data Reuse.

Authors:  Nicole G Weiskopf; Suzanne Bakken; George Hripcsak; Chunhua Weng
Journal:  EGEMS (Wash DC)       Date:  2017-09-04
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  3 in total

1.  Electronic case report forms generation from pathology reports by ARGO, automatic record generator for onco-hematology.

Authors:  Gian Maria Zaccaria; Vito Colella; Simona Colucci; Felice Clemente; Fabio Pavone; Maria Carmela Vegliante; Flavia Esposito; Giuseppina Opinto; Anna Scattone; Giacomo Loseto; Carla Minoia; Bernardo Rossini; Angela Maria Quinto; Vito Angiulli; Luigi Alfredo Grieco; Angelo Fama; Simone Ferrero; Riccardo Moia; Alice Di Rocco; Francesca Maria Quaglia; Valentina Tabanelli; Attilio Guarini; Sabino Ciavarella
Journal:  Sci Rep       Date:  2021-12-10       Impact factor: 4.379

2.  Joint Imaging Platform for Federated Clinical Data Analytics.

Authors:  Jonas Scherer; Marco Nolden; Jens Kleesiek; Jasmin Metzger; Klaus Kades; Verena Schneider; Michael Bach; Oliver Sedlaczek; Andreas M Bucher; Thomas J Vogl; Frank Grünwald; Jens-Peter Kühn; Ralf-Thorsten Hoffmann; Jörg Kotzerke; Oliver Bethge; Lars Schimmöller; Gerald Antoch; Hans-Wilhelm Müller; Andreas Daul; Konstantin Nikolaou; Christian la Fougère; Wolfgang G Kunz; Michael Ingrisch; Balthasar Schachtner; Jens Ricke; Peter Bartenstein; Felix Nensa; Alexander Radbruch; Lale Umutlu; Michael Forsting; Robert Seifert; Ken Herrmann; Philipp Mayer; Hans-Ulrich Kauczor; Tobias Penzkofer; Bernd Hamm; Winfried Brenner; Roman Kloeckner; Christoph Düber; Mathias Schreckenberger; Rickmer Braren; Georgios Kaissis; Marcus Makowski; Matthias Eiber; Andrei Gafita; Rupert Trager; Wolfgang A Weber; Jakob Neubauer; Marco Reisert; Michael Bock; Fabian Bamberg; Jürgen Hennig; Philipp Tobias Meyer; Juri Ruf; Uwe Haberkorn; Stefan O Schoenberg; Tristan Kuder; Peter Neher; Ralf Floca; Heinz-Peter Schlemmer; Klaus Maier-Hein
Journal:  JCO Clin Cancer Inform       Date:  2020-11

3.  A Clinical Prognostic Model Based on Machine Learning from the Fondazione Italiana Linfomi (FIL) MCL0208 Phase III Trial.

Authors:  Gian Maria Zaccaria; Simone Ferrero; Eva Hoster; Roberto Passera; Andrea Evangelista; Elisa Genuardi; Daniela Drandi; Marco Ghislieri; Daniela Barbero; Ilaria Del Giudice; Monica Tani; Riccardo Moia; Stefano Volpetti; Maria Giuseppina Cabras; Nicola Di Renzo; Francesco Merli; Daniele Vallisa; Michele Spina; Anna Pascarella; Giancarlo Latte; Caterina Patti; Alberto Fabbri; Attilio Guarini; Umberto Vitolo; Olivier Hermine; Hanneke C Kluin-Nelemans; Sergio Cortelazzo; Martin Dreyling; Marco Ladetto
Journal:  Cancers (Basel)       Date:  2021-12-31       Impact factor: 6.639

  3 in total

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