Literature DB >> 31630458

Plant organellar RNA editing: what 30 years of research has revealed.

Ian D Small1, Mareike Schallenberg-Rüdinger2, Mizuki Takenaka3, Hakim Mireau4, Oren Ostersetzer-Biran5.   

Abstract

The central dogma in biology defines the flow of genetic information from DNA to RNA to protein. Accordingly, RNA molecules generally accurately follow the sequences of the genes from which they are transcribed. This rule is transgressed by RNA editing, which creates RNA products that differ from their DNA templates. Analyses of the RNA landscapes of terrestrial plants have indicated that RNA editing (in the form of C-U base transitions) is highly prevalent within organelles (that is, mitochondria and chloroplasts). Numerous C→U conversions (and in some plants also U→C) alter the coding sequences of many of the organellar transcripts and can also produce translatable mRNAs by creating AUG start sites or eliminating premature stop codons, or affect the RNA structure, influence splicing and alter the stability of RNAs. RNA-binding proteins are at the heart of post-transcriptional RNA expression. The C-to-U RNA editing process in plant mitochondria involves numerous nuclear-encoded factors, many of which have been identified as pentatricopeptide repeat (PPR) proteins that target editing sites in a sequence-specific manner. In this review we report on major discoveries on RNA editing in plant organelles, since it was first documented 30 years ago.
© 2019 The Authors The Plant Journal © 2019 John Wiley & Sons Ltd.

Keywords:  RNA editing; chloroplasts; cytidine deamination; mitochondria; pentatricopeptide repeat (PPR) proteins

Mesh:

Substances:

Year:  2019        PMID: 31630458     DOI: 10.1111/tpj.14578

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  54 in total

1.  The Dynamic Kaleidoscope of RNA Biology in Plants.

Authors:  Julia Bailey-Serres; Jixian Zhai; Motoaki Seki
Journal:  Plant Physiol       Date:  2020-01       Impact factor: 8.340

2.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

3.  Comprehensive analysis of plastid gene expression during fruit development and ripening of kiwifruit.

Authors:  Qiqi Chen; Pan Shen; Ralph Bock; Shengchun Li; Jiang Zhang
Journal:  Plant Cell Rep       Date:  2022-02-28       Impact factor: 4.570

4.  The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing.

Authors:  Atsushi Sadamitsu; Yuya Inoue; Keiko Sakakibara; Hiromi Tsubota; Tomio Yamaguchi; Hironori Deguchi; Tomoaki Nishiyama; Masaki Shimamura
Journal:  Plant Mol Biol       Date:  2021-11-24       Impact factor: 4.076

5.  The PPR-SMR Protein ATP4 Is Required for Editing the Chloroplast rps8 mRNA in Rice and Maize.

Authors:  Jinghong Zhang; Yipo Guo; Qian Fang; Yongli Zhu; Yang Zhang; Xuejiao Liu; Yongjun Lin; Alice Barkan; Fei Zhou
Journal:  Plant Physiol       Date:  2020-09-14       Impact factor: 8.340

6.  A synthetic RNA editing factor edits its target site in chloroplasts and bacteria.

Authors:  Santana Royan; Bernard Gutmann; Catherine Colas des Francs-Small; Suvi Honkanen; Jason Schmidberger; Ashley Soet; Yueming Kelly Sun; Lilian Vincis Pereira Sanglard; Charles S Bond; Ian Small
Journal:  Commun Biol       Date:  2021-05-10

7.  Transcriptome-Wide Identification of G-to-A RNA Editing in Chronic Social Defeat Stress Mouse Models.

Authors:  Ji Tao; Chun-Yan Ren; Zhi-Yuan Wei; Fuquan Zhang; Jinyu Xu; Jian-Huan Chen
Journal:  Front Genet       Date:  2021-05-19       Impact factor: 4.599

8.  In Arabidopsis thaliana mitochondria 5' end polymorphisms of nad4L-atp4 and nad3-rps12 transcripts are linked to RNA PROCESSING FACTORs 1 and 8.

Authors:  Sarah Schleicher; Stefan Binder
Journal:  Plant Mol Biol       Date:  2021-04-28       Impact factor: 4.076

9.  Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications.

Authors:  Satoshi Kimura; Peter C Dedon; Matthew K Waldor
Journal:  Nat Chem Biol       Date:  2020-06-08       Impact factor: 15.040

Review 10.  The hornworts: morphology, evolution and development.

Authors:  Eftychios Frangedakis; Masaki Shimamura; Juan Carlos Villarreal; Fay-Wei Li; Marta Tomaselli; Manuel Waller; Keiko Sakakibara; Karen S Renzaglia; Péter Szövényi
Journal:  New Phytol       Date:  2020-09-15       Impact factor: 10.151

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