Literature DB >> 31620811

Enterovibrio baiacu sp. nov.

Gustavo P R Azevedo1, Hannah K Mattsson1, Luciana R Appolinario1, Gabriela Calegario1, Luciana Leomil1, Juline M Walter1, Mariana Campeão1, Luciane A Chimetto Tonon2, Ana Paula B Moreira1, Livia Vidal1, Verônica V Vieira3, Koko Otsuki1, Diogo A Tschoeke1, Jean Swings1, Fabiano L Thompson1, Cristiane C Thompson4.   

Abstract

We report here the novel species to encompass the isolate A649T (=CBAS 716T = CBRVS P1061T) obtained from viscera of the healthy pufferfish Sphoeroides spengleri (Family Tetraodontidae). Genomic taxonomy analysis demonstrates that the novel strain A649T had < 95% average amino acid identity/average nucleotide identity (AAI/ANI) and < 70% similarity of genome-to-genome distance (GGDH) towards its closest neighbors which places A649T into a new Enterovibrio species (Enterovibrio baiacu sp nov.). In silico phenotyping disclosed several features that may be used to differentiate related Enterovibrio species. The nearly complete genome assembly of strain A649T consisted of 5.4 Mbp and 4826 coding genes.

Entities:  

Keywords:  Enterovibrio; Genomic taxonomy; New species; Tetraodontidae

Mesh:

Substances:

Year:  2019        PMID: 31620811     DOI: 10.1007/s00284-019-01785-7

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  13 in total

1.  CAP3: A DNA sequence assembly program.

Authors:  X Huang; A Madan
Journal:  Genome Res       Date:  1999-09       Impact factor: 9.043

Review 2.  Biodiversity of vibrios.

Authors:  Fabiano L Thompson; Tetsuya Iida; Jean Swings
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

3.  Inferring the evolutionary history of vibrios by means of multilocus sequence analysis.

Authors:  Tomoo Sawabe; Kumiko Kita-Tsukamoto; Fabiano L Thompson
Journal:  J Bacteriol       Date:  2007-08-17       Impact factor: 3.490

4.  Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences.

Authors:  Gilda Rose S Amaral; Graciela M Dias; Michiyo Wellington-Oguri; Luciane Chimetto; Mariana E Campeão; Fabiano L Thompson; Cristiane C Thompson
Journal:  Int J Syst Evol Microbiol       Date:  2014-02       Impact factor: 2.747

5.  International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Aeromonadaceae, Vibrionaceae and related organisms Minutes of the meeting, 13 November 2017, Chicago, USA.

Authors:  Fabiano Thompson; Bruno Gomez-Gil
Journal:  Int J Syst Evol Microbiol       Date:  2018-05-09       Impact factor: 2.747

6.  Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae.

Authors:  F L Thompson; B Hoste; C C Thompson; J Goris; B Gomez-Gil; L Huys; P De Vos; J Swings
Journal:  Int J Syst Evol Microbiol       Date:  2002-11       Impact factor: 2.747

7.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

8.  Quality control and preprocessing of metagenomic datasets.

Authors:  Robert Schmieder; Robert Edwards
Journal:  Bioinformatics       Date:  2011-01-28       Impact factor: 6.937

9.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Authors:  Ross Overbeek; Robert Olson; Gordon D Pusch; Gary J Olsen; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Bruce Parrello; Maulik Shukla; Veronika Vonstein; Alice R Wattam; Fangfang Xia; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

10.  Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil).

Authors:  Juline M Walter; Diogo A Tschoeke; Pedro M Meirelles; Louisi de Oliveira; Luciana Leomil; Márcio Tenório; Rogério Valle; Paulo S Salomon; Cristiane C Thompson; Fabiano L Thompson
Journal:  PLoS One       Date:  2016-08-22       Impact factor: 3.240

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