Literature DB >> 17704223

Inferring the evolutionary history of vibrios by means of multilocus sequence analysis.

Tomoo Sawabe1, Kumiko Kita-Tsukamoto, Fabiano L Thompson.   

Abstract

We performed the first broad study aiming at the reconstruction of the evolutionary history of vibrios by means of multilocus sequence analysis of nine genes. Overall, 14 distinct clades were recognized using the SplitsTree decomposition method. Some of these clades may correspond to families, e.g., the clades Salinivibrio and Photobacteria, while other clades, e.g., Splendidus and Harveyi, correspond to genera. The common ancestor of all vibrios was estimated to have been present 600 million years ago. We can define species of vibrios as groups of strains that share >95% gene sequence similarity and >99.4% amino acid identity based on the eight protein-coding housekeeping genes. The gene sequence data were used to refine the standard online electronic taxonomic scheme for vibrios (http://www.taxvibrio.lncc.br).

Mesh:

Year:  2007        PMID: 17704223      PMCID: PMC2168739          DOI: 10.1128/JB.00693-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  17 in total

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Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

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Authors:  M Dorsch; D Lane; E Stackebrandt
Journal:  Int J Syst Bacteriol       Date:  1992-01

3.  Split decomposition: a new and useful approach to phylogenetic analysis of distance data.

Authors:  H J Bandelt; A W Dress
Journal:  Mol Phylogenet Evol       Date:  1992-09       Impact factor: 4.286

Review 4.  Biodiversity of vibrios.

Authors:  Fabiano L Thompson; Tetsuya Iida; Jean Swings
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

Review 5.  Determination of the core of a minimal bacterial gene set.

Authors:  Rosario Gil; Francisco J Silva; Juli Peretó; Andrés Moya
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

6.  Vibrios commonly possess two chromosomes.

Authors:  Kazuhisa Okada; Tetsuya Iida; Kumiko Kita-Tsukamoto; Takeshi Honda
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

7.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

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Authors:  Katie E Hyma; David W Lacher; Adam M Nelson; Alyssa C Bumbaugh; J Michael Janda; Nancy A Strockbine; Vincent B Young; Thomas S Whittam
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

9.  Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species.

Authors:  Fabiano L Thompson; Bruno Gomez-Gil; Ana Teresa Ribeiro Vasconcelos; Tomoo Sawabe
Journal:  Appl Environ Microbiol       Date:  2007-05-04       Impact factor: 4.792

10.  Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences.

Authors:  K Kita-Tsukamoto; H Oyaizu; K Nanba; U Simidu
Journal:  Int J Syst Bacteriol       Date:  1993-01
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  77 in total

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Authors:  Crystal N Ellis; Brian M Schuster; Megan J Striplin; Stephen H Jones; Cheryl A Whistler; Vaughn S Cooper
Journal:  Appl Environ Microbiol       Date:  2012-03-09       Impact factor: 4.792

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3.  Merging taxonomy with ecological population prediction in a case study of Vibrionaceae.

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Journal:  Appl Environ Microbiol       Date:  2011-08-26       Impact factor: 4.792

4.  The fur gene as a new phylogenetic marker for Vibrionaceae species identification.

Authors:  Henrique Machado; Lone Gram
Journal:  Appl Environ Microbiol       Date:  2015-02-06       Impact factor: 4.792

5.  Vibrio chemaguriensis sp. nov., from Sundarbans, Bay of Bengal.

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Journal:  Curr Microbiol       Date:  2019-07-06       Impact factor: 2.188

6.  Optimization of multilocus sequence analysis for identification of species in the genus Vibrio.

Authors:  Michael W Gabriel; George Y Matsui; Robert Friedman; Charles R Lovell
Journal:  Appl Environ Microbiol       Date:  2014-06-20       Impact factor: 4.792

7.  A large-scale epidemiological study to identify bacteria pathogenic to Pacific oyster Crassostrea gigas and correlation between virulence and metalloprotease-like activity.

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Journal:  Microb Ecol       Date:  2009-12-11       Impact factor: 4.552

8.  Vibrio chromosomes share common history.

Authors:  Benjamin C Kirkup; LeeAnn Chang; Sarah Chang; Dirk Gevers; Martin F Polz
Journal:  BMC Microbiol       Date:  2010-05-10       Impact factor: 3.605

9.  Assigning strains to bacterial species via the internet.

Authors:  Cynthia J Bishop; David M Aanensen; Gregory E Jordan; Mogens Kilian; William P Hanage; Brian G Spratt
Journal:  BMC Biol       Date:  2009-01-26       Impact factor: 7.431

10.  Genomic taxonomy of Vibrios.

Authors:  Cristiane C Thompson; Ana Carolina P Vicente; Rangel C Souza; Ana Tereza R Vasconcelos; Tammi Vesth; Nelson Alves; David W Ussery; Tetsuya Iida; Fabiano L Thompson
Journal:  BMC Evol Biol       Date:  2009-10-27       Impact factor: 3.260

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