Literature DB >> 31617228

Revealing Complex Ecological Dynamics via Symbolic Regression.

Yize Chen1,2, Marco Tulio Angulo3, Yang-Yu Liu1,4.   

Abstract

Understanding the dynamics of complex ecosystems is a necessary step to maintain and control them. Yet, reverse-engineering ecological dynamics remains challenging largely due to the very broad class of dynamics that ecosystems may take. Here, this challenge is tackled through symbolic regression, a machine learning method that automatically reverse-engineers both the model structure and parameters from temporal data. How combining symbolic regression with a "dictionary" of possible ecological functional responses opens the door to correctly reverse-engineering ecosystem dynamics, even in the case of poorly informative data, is shown. This strategy is validated using both synthetic and experimental data, and it is found that this strategy is promising for the systematic modeling of complex ecological systems.
© 2019 WILEY Periodicals, Inc.

Entities:  

Keywords:  community ecology; ecological dynamics; functional response; symbolic regression

Mesh:

Year:  2019        PMID: 31617228      PMCID: PMC7339472          DOI: 10.1002/bies.201900069

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  19 in total

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Authors: 
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5.  Information leverage in interconnected ecosystems: Overcoming the curse of dimensionality.

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6.  Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling.

Authors:  Hao Ye; Richard J Beamish; Sarah M Glaser; Sue C H Grant; Chih-Hao Hsieh; Laura J Richards; Jon T Schnute; George Sugihara
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Review 7.  The application of ecological theory toward an understanding of the human microbiome.

Authors:  Elizabeth K Costello; Keaton Stagaman; Les Dethlefsen; Brendan J M Bohannan; David A Relman
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Review 8.  Gut-brain axis: how the microbiome influences anxiety and depression.

Authors:  Jane A Foster; Karen-Anne McVey Neufeld
Journal:  Trends Neurosci       Date:  2013-02-04       Impact factor: 13.837

Review 9.  Obesity and the human microbiome.

Authors:  Ruth E Ley
Journal:  Curr Opin Gastroenterol       Date:  2010-01       Impact factor: 3.287

10.  Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Authors:  Xochitl C Morgan; Timothy L Tickle; Harry Sokol; Dirk Gevers; Kathryn L Devaney; Doyle V Ward; Joshua A Reyes; Samir A Shah; Neal LeLeiko; Scott B Snapper; Athos Bousvaros; Joshua Korzenik; Bruce E Sands; Ramnik J Xavier; Curtis Huttenhower
Journal:  Genome Biol       Date:  2012-04-16       Impact factor: 13.583

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  1 in total

1.  Is Human Walking a Network Medicine Problem? An Analysis Using Symbolic Regression Models with Genetic Programming.

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  1 in total

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