Literature DB >> 31616925

GlyGen: Computational and Informatics Resources for Glycoscience.

William S York1, Raja Mazumder2, Rene Ranzinger3, Nathan Edwards4, Robel Kahsay5, Kiyoko F Aoki-Kinoshita6, Matthew P Campbell7, Richard D Cummings8, Ten Feizi9, Maria Martin10, Darren A Natale4, Nicolle H Packer11, Robert J Woods12, Gaurav Agarwal1, Sena Arpinar3, Sanath Bhat3, Judith Blake13, Leyla Jael Garcia Castro10, Brian Fochtman5, Jeffrey Gildersleeve14, Radoslav Goldman15, Xavier Holmes5, Vinamra Jain3, Sujeet Kulkarni3, Rupali Mahadik3, Akul Mehta8, Reza Mousavi16, Sandeep Nakarakommula3, Rahi Navelkar5, Nagarajan Pattabiraman5, Michael J Pierce3, Karen Ross17, Preethi Vasudev10, Jeet Vora5, Tatiana Williamson3, Wenjin Zhang4.   

Abstract

Keywords:  bioinformatics; function; glycoinformatics/database; structure

Year:  2020        PMID: 31616925     DOI: 10.1093/glycob/cwz080

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


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  39 in total

1.  Evolutionary conservation of human ketodeoxynonulosonic acid production is independent of sialoglycan biosynthesis.

Authors:  Kunio Kawanishi; Sudeshna Saha; Sandra Diaz; Michael Vaill; Aniruddha Sasmal; Shoib S Siddiqui; Biswa Choudhury; Kumar Sharma; Xi Chen; Ian C Schoenhofen; Chihiro Sato; Ken Kitajima; Hudson H Freeze; Anja Münster-Kühnel; Ajit Varki
Journal:  J Clin Invest       Date:  2021-03-01       Impact factor: 14.808

2.  The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences.

Authors:  Issaku Yamada; Masaaki Shiota; Daisuke Shinmachi; Tamiko Ono; Shinichiro Tsuchiya; Masae Hosoda; Akihiro Fujita; Nobuyuki P Aoki; Yu Watanabe; Noriaki Fujita; Kiyohiko Angata; Hiroyuki Kaji; Hisashi Narimatsu; Shujiro Okuda; Kiyoko F Aoki-Kinoshita
Journal:  Nat Methods       Date:  2020-07       Impact factor: 28.547

3.  Sialic acid-containing glycolipids mediate binding and viral entry of SARS-CoV-2.

Authors:  Linh Nguyen; Kelli A McCord; Duong T Bui; Kim M Bouwman; Elena N Kitova; Mohamed Elaish; Dhanraj Kumawat; Gour C Daskhan; Ilhan Tomris; Ling Han; Pradeep Chopra; Tzu-Jing Yang; Steven D Willows; Andrew L Mason; Lara K Mahal; Todd L Lowary; Lori J West; Shang-Te Danny Hsu; Tom Hobman; Stephen M Tompkins; Geert-Jan Boons; Robert P de Vries; Matthew S Macauley; John S Klassen
Journal:  Nat Chem Biol       Date:  2021-11-09       Impact factor: 15.040

4.  RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.

Authors:  Stephen K Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Li Chen; Gregg V Crichlow; Jose M Duarte; Shuchismita Dutta; Maryam Fayazi; Zukang Feng; Justin W Flatt; Sai J Ganesan; David S Goodsell; Sutapa Ghosh; Rachel Kramer Green; Vladimir Guranovic; Jeremy Henry; Brian P Hudson; Catherine L Lawson; Yuhe Liang; Robert Lowe; Ezra Peisach; Irina Persikova; Dennis W Piehl; Yana Rose; Andrej Sali; Joan Segura; Monica Sekharan; Chenghua Shao; Brinda Vallat; Maria Voigt; John D Westbrook; Shamara Whetstone; Jasmine Y Young; Christine Zardecki
Journal:  Protein Sci       Date:  2021-11-06       Impact factor: 6.725

5.  Bioinformatics in Immunoglobulin Glycosylation Analysis.

Authors:  Frédérique Lisacek; Kathirvel Alagesan; Catherine Hayes; Steffen Lippold; Noortje de Haan
Journal:  Exp Suppl       Date:  2021

Review 6.  Tools for mammalian glycoscience research.

Authors:  Matthew E Griffin; Linda C Hsieh-Wilson
Journal:  Cell       Date:  2022-07-08       Impact factor: 66.850

7.  Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.

Authors:  Chenghua Shao; Zukang Feng; John D Westbrook; Ezra Peisach; John Berrisford; Yasuyo Ikegawa; Genji Kurisu; Sameer Velankar; Stephen K Burley; Jasmine Y Young
Journal:  Glycobiology       Date:  2021-09-20       Impact factor: 4.313

Review 8.  Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication.

Authors:  Benjamin P Kellman; Nathan E Lewis
Journal:  Trends Biochem Sci       Date:  2020-12-18       Impact factor: 13.807

Review 9.  Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications.

Authors:  Maia I Kelly; Mustafa Albahrani; Chase Castro; Ellen Poon; Bin Yan; Jack Littrell; Matthew Waas; Kenneth R Boheler; Rebekah L Gundry
Journal:  Pflugers Arch       Date:  2021-04-08       Impact factor: 3.657

10.  Glycan Compositions with GlyConnect Compozitor to Enhance Glycopeptide Identification.

Authors:  Julien Mariethoz; Catherine Hayes; Frédérique Lisacek
Journal:  Methods Mol Biol       Date:  2021
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