Literature DB >> 31612410

The integrative regulatory network of circRNA and microRNA in keloid scarring.

Jingpei Shi1,2, Shuluan Yao3, Pan Chen4, Yuan Yang2, Mengjiao Qian5, Yi Han1, Nan Wang6, Yu Zhao1, Yongjing He7, Lechun Lyu8, Di Lu9.   

Abstract

Circular RNA (circRNA), a novel type of non-coding RNA that consists of a circular loop, has been demonstrated to act as a "sponge" for microRNAs (miRNAs). However, the role of circRNAs in keloid remains unknown. In this study, we investigated circRNA expression profiles in keloid to identify potential diagnostic and therapeutic circRNAs. We performed a circRNA microarray assay to determine circRNA expression in keloid and paired normal skin tissues. Quantitative reverse transcription polymerase chain reaction was used to evaluate the expression levels of candidate circRNAs. The most significantly over-expressed circRNA was used to predict putative miRNA targets and the binding sites of miRNAs with this circRNA. Finally, we constructed a circRNA-miRNA interaction network and carried out gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. We found 52 significantly upregulated and 24 downregulated circRNAs in keloid compared with normal skin tissue. We confirmed that hsa_circ_0057452, hsa_circ_0007482, hsa_circ_0020792, hsa_circ_0057342, and hsa_circ_0043688 were significantly upregulated in keloid tissues. Analysis of the circRNA-miRNA interaction network revealed that circRNAs could interact with miRNAs, including miRNA-29a, miRNA-23a-5p and miRNA-1976. GO and KEGG analyses indicated that these target genes were involved in biological functions and signaling pathways that may play vital roles in the pathogenesis of keloid. This study revealed that circRNAs are potentially implicated in the development of keloid and could serve as novel diagnostic and therapeutic targets.

Entities:  

Keywords:  Circular RNA; Keloid; Microarray; microRNA

Mesh:

Substances:

Year:  2019        PMID: 31612410     DOI: 10.1007/s11033-019-05120-y

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  35 in total

1.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

Review 2.  Keloid scarring: bench and bedside.

Authors:  Oliver Seifert; Ulrich Mrowietz
Journal:  Arch Dermatol Res       Date:  2009-04-10       Impact factor: 3.017

3.  Circular RNA profiling reveals that circCOL3A1-859267 regulate type I collagen expression in photoaged human dermal fibroblasts.

Authors:  Yating Peng; Xiaojing Song; Yue Zheng; Xinyi Wang; Wei Lai
Journal:  Biochem Biophys Res Commun       Date:  2017-03-09       Impact factor: 3.575

4.  Identification and integrated analysis of microRNA expression profiles in keloid.

Authors:  Lianmei Zhong; Ligong Bian; Jing Lyu; Huiyan Jin; Zijie Liu; Lechun Lyu; Di Lu
Journal:  J Cosmet Dermatol       Date:  2018-07-20       Impact factor: 2.696

5.  Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt.

Authors:  Mounir Georges AbouHaidar; Srividhya Venkataraman; Ashkan Golshani; Bolin Liu; Tauqeer Ahmad
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-24       Impact factor: 11.205

6.  Circular RNAs are a large class of animal RNAs with regulatory potency.

Authors:  Sebastian Memczak; Marvin Jens; Antigoni Elefsinioti; Francesca Torti; Janna Krueger; Agnieszka Rybak; Luisa Maier; Sebastian D Mackowiak; Lea H Gregersen; Mathias Munschauer; Alexander Loewer; Ulrike Ziebold; Markus Landthaler; Christine Kocks; Ferdinand le Noble; Nikolaus Rajewsky
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

Review 7.  Keloids: The paradigm of skin fibrosis - Pathomechanisms and treatment.

Authors:  Jonathan P Andrews; Jaana Marttala; Edward Macarak; Joel Rosenbloom; Jouni Uitto
Journal:  Matrix Biol       Date:  2016-02-02       Impact factor: 11.583

8.  circBase: a database for circular RNAs.

Authors:  Petar Glažar; Panagiotis Papavasileiou; Nikolaus Rajewsky
Journal:  RNA       Date:  2014-09-18       Impact factor: 4.942

9.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

10.  miRNA-23a/27a attenuates muscle atrophy and renal fibrosis through muscle-kidney crosstalk.

Authors:  Aiqing Zhang; Min Li; Bin Wang; Janet D Klein; S Russ Price; Xiaonan H Wang
Journal:  J Cachexia Sarcopenia Muscle       Date:  2018-03-26       Impact factor: 12.910

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  14 in total

1.  Circ_0057452 functions as a ceRNA in hypertrophic scar fibroblast proliferation and VEGF expression by regulating TGF-β2 expression and adsorbing miR-145-5p.

Authors:  Xiaoliu Qi; Yuxin Liu; Ming Yang
Journal:  Am J Transl Res       Date:  2021-06-15       Impact factor: 4.060

2.  Circ_0008450 downregulates Runx3 to promote the proliferation and epithelial-mesenchymal transition of human keratinized epithelial cells.

Authors:  Huaxia Chen; Xiao Xu; Linying Lai; Ran Huo; Minliang Chen
Journal:  Cell Cycle       Date:  2020-11-01       Impact factor: 4.534

3.  CircPDE7B/miR-661 axis accelerates the progression of human keloid fibroblasts by upregulating fibroblast growth factor 2 (FGF2).

Authors:  Fenglian Wu; Hongbin He; Yanxin Chen; Donglai Zhu; Tao Jiang; Jiaxin Wang
Journal:  Mol Cell Biochem       Date:  2022-01-25       Impact factor: 3.396

4.  LncRNA GNAS-AS1 knockdown inhibits keloid cells growth by mediating the miR-188-5p/RUNX2 axis.

Authors:  Yun Liu; Lei Li; Jia-Yao Wang; Fei Gao; Xia Lin; Shi-Shuai Lin; Zhi-Yang Qiu; Zun-Hong Liang
Journal:  Mol Cell Biochem       Date:  2022-08-29       Impact factor: 3.842

Review 5.  Advances in the pathogenesis and clinical application prospects of tumor biomolecules in keloid.

Authors:  Yijun Xia; Youbin Wang; Mengjie Shan; Yan Hao; Hao Liu; Qiao Chen; Zhengyun Liang
Journal:  Burns Trauma       Date:  2022-06-25

Review 6.  Epigenetic regulation of cellular functions in wound healing.

Authors:  Irena Pastar; Jelena Marjanovic; Rivka C Stone; Vivien Chen; Jamie L Burgess; Joshua S Mervis; Marjana Tomic-Canic
Journal:  Exp Dermatol       Date:  2021-04-01       Impact factor: 4.511

7.  Circular RNA CircCOL5A1 Sponges the MiR-7-5p/Epac1 Axis to Promote the Progression of Keloids Through Regulating PI3K/Akt Signaling Pathway.

Authors:  Wenchang Lv; Shengxuan Liu; Qi Zhang; Weijie Hu; Yiping Wu; Yuping Ren
Journal:  Front Cell Dev Biol       Date:  2021-01-21

Review 8.  Epigenetic modification mechanisms involved in keloid: current status and prospect.

Authors:  Wenchang Lv; Yuping Ren; Kai Hou; Weijie Hu; Yi Yi; Mingchen Xiong; Min Wu; Yiping Wu; Qi Zhang
Journal:  Clin Epigenetics       Date:  2020-11-26       Impact factor: 6.551

Review 9.  Genomics of Human Fibrotic Diseases: Disordered Wound Healing Response.

Authors:  Rivka C Stone; Vivien Chen; Jamie Burgess; Sukhmani Pannu; Marjana Tomic-Canic
Journal:  Int J Mol Sci       Date:  2020-11-14       Impact factor: 5.923

10.  CircPlekha7 plays an anti-fibrotic role in intrauterine adhesions by modulating endometrial stromal cell proliferation and apoptosis.

Authors:  Wei Xie; Min He; Yuhuan Liu; Xiaowu Huang; Dongmei Song; Yu Xiao
Journal:  J Reprod Dev       Date:  2020-08-15       Impact factor: 2.214

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