Literature DB >> 31612156

Development of the Texas A&M Superfund Research Program Computational Platform for Data Integration, Visualization, and Analysis.

Rajib Mukherjee1,2, Melis Onel1,2, Burcu Beykal1,2, Adam T Szafran3, Fabio Stossi3, Michael A Mancini3, Lan Zhou4, Fred A Wright5, Efstratios N Pistikopoulos1,2.   

Abstract

The National Institute of Environmental Health Sciences (NIEHS) Superfund Research Program (SRP) aims to support university-based multidisciplinary research on human health and environmental issues related to hazardous substances and pollutants. The Texas A&M Superfund Research Program comprehensively evaluates the complexities of hazardous chemical mixtures and their potential adverse health impacts due to exposure through a number of multi-disciplinary projects and cores. One of the essential components of the Texas A&M Superfund Research Center is the Data Science Core, which serves as the basis for translating the data produced by the multi-disciplinary research projects into useful knowledge for the community via data collection, quality control, analysis, and model generation. In this work, we demonstrate the Texas A&M Superfund Research Program computational platform, which houses and integrates large-scale, diverse datasets generated across the Center, provides basic visualization service to facilitate interpretation, monitors data quality, and finally implements a variety of state-of-the-art statistical analysis for model/tool development. The platform is aimed to facilitate effective integration and collaboration across the Center and acts as an enabler for the dissemination of comprehensive ad-hoc tools and models developed to address the environmental and health effects of chemical mixture exposure during environmental emergency-related contamination events.

Entities:  

Keywords:  Data analytics; collaborative networks; data integration; statistical analysis

Year:  2019        PMID: 31612156      PMCID: PMC6791821          DOI: 10.1016/B978-0-12-818634-3.50162-4

Source DB:  PubMed          Journal:  ESCAPE


  4 in total

1.  Integrated Model of Chemical Perturbations of a Biological Pathway Using 18 In Vitro High-Throughput Screening Assays for the Estrogen Receptor.

Authors:  Richard S Judson; Felicia Maria Magpantay; Vijay Chickarmane; Cymra Haskell; Nessy Tania; Jean Taylor; Menghang Xia; Ruili Huang; Daniel M Rotroff; Dayne L Filer; Keith A Houck; Matthew T Martin; Nisha Sipes; Ann M Richard; Kamel Mansouri; R Woodrow Setzer; Thomas B Knudsen; Kevin M Crofton; Russell S Thomas
Journal:  Toxicol Sci       Date:  2015-08-13       Impact factor: 4.849

2.  Optimal Chemical Grouping and Sorbent Material Design by Data Analysis, Modeling and Dimensionality Reduction Techniques.

Authors:  Melis Onel; Burcu Beykal; Meichen Wang; Fabian A Grimm; Lan Zhou; Fred A Wright; Timothy D Phillips; Ivan Rusyn; Efstratios N Pistikopoulos
Journal:  ESCAPE       Date:  2018-07-04

3.  Big Data Approach to Batch Process Monitoring: Simultaneous Fault Detection and Diagnosis Using Nonlinear Support Vector Machine-based Feature Selection.

Authors:  Melis Onel; Chris A Kieslich; Yannis A Guzman; Christodoulos A Floudas; Efstratios N Pistikopoulos
Journal:  Comput Chem Eng       Date:  2018-03-28       Impact factor: 3.845

4.  Characterizing properties of non-estrogenic substituted bisphenol analogs using high throughput microscopy and image analysis.

Authors:  Adam T Szafran; Fabio Stossi; Maureen G Mancini; Cheryl L Walker; Michael A Mancini
Journal:  PLoS One       Date:  2017-07-13       Impact factor: 3.240

  4 in total
  1 in total

1.  Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms.

Authors:  Rajib Mukherjee; Burcu Beykal; Adam T Szafran; Melis Onel; Fabio Stossi; Maureen G Mancini; Dillon Lloyd; Fred A Wright; Lan Zhou; Michael A Mancini; Efstratios N Pistikopoulos
Journal:  PLoS Comput Biol       Date:  2020-09-24       Impact factor: 4.475

  1 in total

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