Literature DB >> 28268044

Deciphering the mRNP Code: RNA-Bound Determinants of Post-Transcriptional Gene Regulation.

Niels H Gehring1, Elmar Wahle2, Utz Fischer3.   

Abstract

Eukaryotic cells determine the final protein output of their genetic program not only by controlling transcription but also by regulating the localization, translation and turnover rates of their mRNAs. Ultimately, the fate of any given mRNA is determined by the ensemble of all associated RNA-binding proteins (RBPs), non-coding RNAs and metabolites collectively known as the messenger ribonucleoprotein particle (mRNP). Although many mRNA-associated factors have been identified over the past years, little is known about the composition of individual mRNPs and the cooperation of their constituents. In this review we discuss recent progress that has been made on how this 'mRNP code' is established on individual transcripts and how it is interpreted during gene expression in eukaryotic cells.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28268044     DOI: 10.1016/j.tibs.2017.02.004

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  36 in total

Review 1.  Is it useful to use several "omics" for obtaining valuable results?

Authors:  Magdalena Zapalska-Sozoniuk; Lukasz Chrobak; Krzysztof Kowalczyk; Marta Kankofer
Journal:  Mol Biol Rep       Date:  2019-04-15       Impact factor: 2.316

2.  Long noncoding RNA complementarity and target transcripts abundance.

Authors:  Richard W Zealy; Mikhail Fomin; Sylvia Davila; Daniel Makowsky; Haley Thigpen; Catherine H McDowell; James C Cummings; Edward S Lee; Sang-Ho Kwon; Kyung-Won Min; Je-Hyun Yoon
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-02-06       Impact factor: 4.490

3.  Identifying the assembly intermediate in which Gag first associates with unspliced HIV-1 RNA suggests a novel model for HIV-1 RNA packaging.

Authors:  Brook C Barajas; Motoko Tanaka; Bridget A Robinson; Daryl J Phuong; Kasana Chutiraka; Jonathan C Reed; Jaisri R Lingappa
Journal:  PLoS Pathog       Date:  2018-04-17       Impact factor: 6.823

Review 4.  A brave new world of RNA-binding proteins.

Authors:  Matthias W Hentze; Alfredo Castello; Thomas Schwarzl; Thomas Preiss
Journal:  Nat Rev Mol Cell Biol       Date:  2018-01-17       Impact factor: 94.444

5.  RNA-protein coevolution study of Gemin5 uncovers the role of the PXSS motif of RBS1 domain for RNA binding.

Authors:  Rosario Francisco-Velilla; Azman Embarc-Buh; Sergio Rangel-Guerrero; Sudipto Basu; Sudip Kundu; Encarnacion Martinez-Salas
Journal:  RNA Biol       Date:  2020-05-31       Impact factor: 4.652

6.  Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges.

Authors:  Benedikt M Beckmann; Sander Granneman
Journal:  Methods Mol Biol       Date:  2019

7.  MAPK signaling couples SCF-mediated degradation of translational regulators to oocyte meiotic progression.

Authors:  Edyta Kisielnicka; Ryuji Minasaki; Christian R Eckmann
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-01       Impact factor: 11.205

Review 8.  UsnRNP biogenesis: mechanisms and regulation.

Authors:  Oliver J Gruss; Rajyalakshmi Meduri; Maximilian Schilling; Utz Fischer
Journal:  Chromosoma       Date:  2017-08-01       Impact factor: 4.316

9.  The RNA binding protein FgRbp1 regulates specific pre-mRNA splicing via interacting with U2AF23 in Fusarium.

Authors:  Minhui Wang; Tianling Ma; Haixia Wang; Jianzhao Liu; Yun Chen; Won Bo Shim; Zhonghua Ma
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

10.  Opportunities and Challenges in Global Quantification of RNA-Protein Interaction via UV Cross-Linking.

Authors:  Carlos H Vieira-Vieira; Matthias Selbach
Journal:  Front Mol Biosci       Date:  2021-05-13
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