Literature DB >> 31602088

Lung Cancer Detection using Co-learning from Chest CT Images and Clinical Demographics.

Jiachen Wang1, Riqiang Gao1, Yuankai Huo2, Shunxing Bao1, Yunxi Xiong1, Sanja L Antic3, Travis J Osterman4, Pierre P Massion3, Bennett A Landman1,2.   

Abstract

Early detection of lung cancer is essential in reducing mortality. Recent studies have demonstrated the clinical utility of low-dose computed tomography (CT) to detect lung cancer among individuals selected based on very limited clinical information. However, this strategy yields high false positive rates, which can lead to unnecessary and potentially harmful procedures. To address such challenges, we established a pipeline that co-learns from detailed clinical demographics and 3D CT images. Toward this end, we leveraged data from the Consortium for Molecular and Cellular Characterization of Screen-Detected Lesions (MCL), which focuses on early detection of lung cancer. A 3D attention-based deep convolutional neural net (DCNN) is proposed to identify lung cancer from the chest CT scan without prior anatomical location of the suspicious nodule. To improve upon the non-invasive discrimination between benign and malignant, we applied a random forest classifier to a dataset integrating clinical information to imaging data. The results show that the AUC obtained from clinical demographics alone was 0.635 while the attention network alone reached an accuracy of 0.687. In contrast when applying our proposed pipeline integrating clinical and imaging variables, we reached an AUC of 0.787 on the testing dataset. The proposed network both efficiently captures anatomical information for classification and also generates attention maps that explain the features that drive performance.

Entities:  

Year:  2019        PMID: 31602088      PMCID: PMC6786775          DOI: 10.1117/12.2512965

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  5 in total

1.  Reduced lung-cancer mortality with low-dose computed tomographic screening.

Authors:  Denise R Aberle; Amanda M Adams; Christine D Berg; William C Black; Jonathan D Clapp; Richard M Fagerstrom; Ilana F Gareen; Constantine Gatsonis; Pamela M Marcus; JoRean D Sicks
Journal:  N Engl J Med       Date:  2011-06-29       Impact factor: 91.245

2.  Evaluate the Malignancy of Pulmonary Nodules Using the 3-D Deep Leaky Noisy-OR Network.

Authors:  Fangzhou Liao; Ming Liang; Zhe Li; Xiaolin Hu; Sen Song
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2019-02-14       Impact factor: 10.451

3.  Cancer statistics, 2016.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2016-01-07       Impact factor: 508.702

4.  Assessing the inter-observer variability of Computer-Aided Nodule Assessment and Risk Yield (CANARY) to characterize lung adenocarcinomas.

Authors:  Erica C Nakajima; Michael P Frankland; Tucker F Johnson; Sanja L Antic; Heidi Chen; Sheau-Chiann Chen; Ronald A Karwoski; Ronald Walker; Bennett A Landman; Ryan D Clay; Brian J Bartholmai; Srinivasan Rajagopalan; Tobias Peikert; Pierre P Massion; Fabien Maldonado
Journal:  PLoS One       Date:  2018-06-01       Impact factor: 3.240

Review 5.  Towards Portable Large-Scale Image Processing with High-Performance Computing.

Authors:  Yuankai Huo; Justin Blaber; Stephen M Damon; Brian D Boyd; Shunxing Bao; Prasanna Parvathaneni; Camilo Bermudez Noguera; Shikha Chaganti; Vishwesh Nath; Jasmine M Greer; Ilwoo Lyu; William R French; Allen T Newton; Baxter P Rogers; Bennett A Landman
Journal:  J Digit Imaging       Date:  2018-06       Impact factor: 4.056

  5 in total
  3 in total

1.  Deep Multi-task Prediction of Lung Cancer and Cancer-free Progression from Censored Heterogenous Clinical Imaging.

Authors:  Riqiang Gao; Lingfeng Li; Yucheng Tang; Sanja L Antic; Alexis B Paulson; Yuankai Huo; Kim L Sandler; Pierre P Massion; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

2.  Internal-transfer Weighting of Multi-task Learning for Lung Cancer Detection.

Authors:  Yiyuan Yang; Riqiang Gao; Yucheng Tang; Sanja L Antic; Steve Deppen; Yuankai Huo; Kim L Sandler; Pierre P Massion; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

3.  Time-distanced gates in long short-term memory networks.

Authors:  Riqiang Gao; Yucheng Tang; Kaiwen Xu; Yuankai Huo; Shunxing Bao; Sanja L Antic; Emily S Epstein; Steve Deppen; Alexis B Paulson; Kim L Sandler; Pierre P Massion; Bennett A Landman
Journal:  Med Image Anal       Date:  2020-07-18       Impact factor: 8.545

  3 in total

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