Literature DB >> 32745977

Time-distanced gates in long short-term memory networks.

Riqiang Gao1, Yucheng Tang2, Kaiwen Xu2, Yuankai Huo2, Shunxing Bao2, Sanja L Antic3, Emily S Epstein3, Steve Deppen4, Alexis B Paulson5, Kim L Sandler5, Pierre P Massion3, Bennett A Landman6.   

Abstract

The Long Short-Term Memory (LSTM) network is widely used in modeling sequential observations in fields ranging from natural language processing to medical imaging. The LSTM has shown promise for interpreting computed tomography (CT) in lung screening protocols. Yet, traditional image-based LSTM models ignore interval differences, while recently proposed interval-modeled LSTM variants are limited in their ability to interpret temporal proximity. Meanwhile, clinical imaging acquisition may be irregularly sampled, and such sampling patterns may be commingled with clinical usages. In this paper, we propose the Distanced LSTM (DLSTM) by introducing time-distanced (i.e., time distance to the last scan) gates with a temporal emphasis model (TEM) targeting at lung cancer diagnosis (i.e., evaluating the malignancy of pulmonary nodules). Briefly, (1) the time distance of every scan to the last scan is modeled explicitly, (2) time-distanced input and forget gates in DLSTM are introduced across regular and irregular sampling sequences, and (3) the newer scan in serial data is emphasized by the TEM. The DLSTM algorithm is evaluated with both simulated data and real CT images (from 1794 National Lung Screening Trial (NLST) patients with longitudinal scans and 1420 clinical studied patients). Experimental results on simulated data indicate the DLSTM can capture families of temporal relationships that cannot be detected with traditional LSTM. Cross-validation on empirical CT datasets demonstrates that DLSTM achieves leading performance on both regularly and irregularly sampled data (e.g., improving LSTM from 0.6785 to 0.7085 on F1 score in NLST). In external-validation on irregularly acquired data, the benchmarks achieved 0.8350 (CNN feature) and 0.8380 (with LSTM) on AUC score, while the proposed DLSTM achieves 0.8905. In conclusion, the DLSTM approach is shown to be compatible with families of linear, quadratic, exponential, and log-exponential temporal models. The DLSTM can be readily extended with other temporal dependence interactions while hardly increasing overall model complexity.
Copyright © 2020. Published by Elsevier B.V.

Entities:  

Keywords:  Distanced LSTM; Longitudinal; Lung cancer diagnosis; Temporal Emphasis Model

Mesh:

Year:  2020        PMID: 32745977      PMCID: PMC7484010          DOI: 10.1016/j.media.2020.101785

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  12 in total

1.  The National Lung Screening Trial: overview and study design.

Authors:  Denise R Aberle; Christine D Berg; William C Black; Timothy R Church; Richard M Fagerstrom; Barbara Galen; Ilana F Gareen; Constantine Gatsonis; Jonathan Goldin; John K Gohagan; Bruce Hillman; Carl Jaffe; Barnett S Kramer; David Lynch; Pamela M Marcus; Mitchell Schnall; Daniel C Sullivan; Dorothy Sullivan; Carl J Zylak
Journal:  Radiology       Date:  2010-11-02       Impact factor: 11.105

2.  Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: The ANODE09 study.

Authors:  Bram van Ginneken; Samuel G Armato; Bartjan de Hoop; Saskia van Amelsvoort-van de Vorst; Thomas Duindam; Meindert Niemeijer; Keelin Murphy; Arnold Schilham; Alessandra Retico; Maria Evelina Fantacci; Niccolò Camarlinghi; Francesco Bagagli; Ilaria Gori; Takeshi Hara; Hiroshi Fujita; Gianfranco Gargano; Roberto Bellotti; Sabina Tangaro; Lourdes Bolaños; Francesco De Carlo; Piergiorgio Cerello; Sorin Cristian Cheran; Ernesto Lopez Torres; Mathias Prokop
Journal:  Med Image Anal       Date:  2010-06-04       Impact factor: 8.545

3.  Cancer statistics, 2019.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2019-01-08       Impact factor: 508.702

4.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

5.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks.

Authors:  Shaoqing Ren; Kaiming He; Ross Girshick; Jian Sun
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-06-06       Impact factor: 6.226

6.  Reduced lung-cancer mortality with low-dose computed tomographic screening.

Authors:  Denise R Aberle; Amanda M Adams; Christine D Berg; William C Black; Jonathan D Clapp; Richard M Fagerstrom; Ilana F Gareen; Constantine Gatsonis; Pamela M Marcus; JoRean D Sicks
Journal:  N Engl J Med       Date:  2011-06-29       Impact factor: 91.245

7.  Deep Learning Predicts Lung Cancer Treatment Response from Serial Medical Imaging.

Authors:  Yiwen Xu; Ahmed Hosny; Roman Zeleznik; Chintan Parmar; Thibaud Coroller; Idalid Franco; Raymond H Mak; Hugo J W L Aerts
Journal:  Clin Cancer Res       Date:  2019-04-22       Impact factor: 12.531

8.  Multi-path x-D Recurrent Neural Networks for Collaborative Image Classification.

Authors:  Riqiang Gao; Yuankai Huo; Shunxing Bao; Yucheng Tang; Sanja L Antic; Emily S Epstein; Steve Deppen; Alexis B Paulson; Kim L Sandler; Pierre P Massion; Bennett A Landman
Journal:  Neurocomputing       Date:  2020-02-15       Impact factor: 5.719

9.  Lung tumor growth correlates with glucose metabolism measured by fluoride-18 fluorodeoxyglucose positron emission tomography.

Authors:  F G Duhaylongsod; V J Lowe; E F Patz; A L Vaughn; R E Coleman; W G Wolfe
Journal:  Ann Thorac Surg       Date:  1995-11       Impact factor: 4.330

10.  End-to-end lung cancer screening with three-dimensional deep learning on low-dose chest computed tomography.

Authors:  Diego Ardila; Atilla P Kiraly; Sujeeth Bharadwaj; Bokyung Choi; Joshua J Reicher; Lily Peng; Daniel Tse; Mozziyar Etemadi; Wenxing Ye; Greg Corrado; David P Naidich; Shravya Shetty
Journal:  Nat Med       Date:  2019-05-20       Impact factor: 53.440

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  2 in total

1.  Longitudinal prediction of lung nodule invasiveness by sequential modelling with common clinical computed tomography (CT) measurements: a prediction accuracy study.

Authors:  Guangyu Tao; Dejun Shi; Lingming Yu; Chunji Chen; Zheng Zhang; Chang Min Park; Edyta Szurowska; Yinan Chen; Rui Wang; Hong Yu
Journal:  Transl Lung Cancer Res       Date:  2022-05

2.  Prediction of future imagery of lung nodule as growth modeling with follow-up computed tomography scans using deep learning: a retrospective cohort study.

Authors:  Guangyu Tao; Li Zhu; Qunhui Chen; Lekang Yin; Yamin Li; Jiancheng Yang; Bingbing Ni; Zheng Zhang; Chi Wan Koo; Pradnya D Patil; Yinan Chen; Hong Yu; Yi Xu; Xiaodan Ye
Journal:  Transl Lung Cancer Res       Date:  2022-02
  2 in total

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