Literature DB >> 31598751

Unprogrammed epigenetic variation mediated by stochastic formation of ectopic heterochromatin.

Masato Sorida1, Yota Murakami2,3.   

Abstract

Changes in gene expression via chromatin-mediated mechanisms are important for reprogramming and differentiation, but uncontrolled changes can potentially lead to harmful or adaptive phenotypic alteration. Thus, diversification of the genome-wide chromatin state must be strictly limited, but the underlying mechanism of this regulation is largely unknown. In this review, we focused on distribution of heterochromatin, a tight chromatin structure that negatively regulates gene expression. Heterochromatin is characterized by methylation of histone H3 at lysine 9, and its formation and spreading are controlled by H3K9-specific methyltransferases and reversal factors such as histone demethylases. We summarize recent findings and discuss how variability in the heterochromatin distribution is controlled in the unicellular eukaryote fission yeast. In this context, we recently found that the anti-silencing factor Epe1 plays a key role in the formation of the individual-specific heterochromatin distribution. In conclusion, recent studies revealed that there are many potential heterochromatin formation sites in the fission yeast genome, and several proteins contribute to suppression of spreading and genome-wide dispersal of heterochromatin; knowledge from fission yeast studies may provide insights into the mechanisms regulating epigenetic diversification in multicellular eukaryotes.

Entities:  

Keywords:  Ectopic heterochromatin; Epe1; Epigenetic variation; Fission yeast; H3K9 methylation; JmjC

Mesh:

Substances:

Year:  2019        PMID: 31598751     DOI: 10.1007/s00294-019-01031-4

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  61 in total

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Authors:  Yuriko Harigaya; Hirotsugu Tanaka; Soichiro Yamanaka; Kayoko Tanaka; Yoshinori Watanabe; Chihiro Tsutsumi; Yuji Chikashige; Yasushi Hiraoka; Akira Yamashita; Masayuki Yamamoto
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

2.  Epigenetics for ecologists.

Authors:  Oliver Bossdorf; Christina L Richards; Massimo Pigliucci
Journal:  Ecol Lett       Date:  2007-11-15       Impact factor: 9.492

Review 3.  How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging.

Authors:  Jacob J Herman; Hamish G Spencer; Kathleen Donohue; Sonia E Sultan
Journal:  Evolution       Date:  2013-12-20       Impact factor: 3.694

4.  The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast.

Authors:  Hogyu David Seo; Yoonjung Choi; Minhoo Kim; Keunsoo Kang; Takeshi Urano; Daeyoup Lee
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

5.  Targeting the epigenome for treatment of cancer.

Authors:  E-J Geutjes; P K Bajpe; R Bernards
Journal:  Oncogene       Date:  2011-12-05       Impact factor: 9.867

6.  A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations.

Authors:  Sreenath V Sharma; Diana Y Lee; Bihua Li; Margaret P Quinlan; Fumiyuki Takahashi; Shyamala Maheswaran; Ultan McDermott; Nancy Azizian; Lee Zou; Michael A Fischbach; Kwok-Kin Wong; Kathleyn Brandstetter; Ben Wittner; Sridhar Ramaswamy; Marie Classon; Jeff Settleman
Journal:  Cell       Date:  2010-04-02       Impact factor: 41.582

7.  Regulation of chromatin structure by site-specific histone H3 methyltransferases.

Authors:  S Rea; F Eisenhaber; D O'Carroll; B D Strahl; Z W Sun; M Schmid; S Opravil; K Mechtler; C P Ponting; C D Allis; T Jenuwein
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

8.  A novel jmjC domain protein modulates heterochromatization in fission yeast.

Authors:  Nabieh Ayoub; Ken-ichi Noma; Sara Isaac; Tamar Kahan; Shiv I S Grewal; Amikam Cohen
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

9.  The Paf1 complex represses small-RNA-mediated epigenetic gene silencing.

Authors:  Katarzyna Maria Kowalik; Yukiko Shimada; Valentin Flury; Michael Beda Stadler; Julia Batki; Marc Bühler
Journal:  Nature       Date:  2015-03-25       Impact factor: 49.962

10.  Iron homeostasis regulates facultative heterochromatin assembly in adaptive genome control.

Authors:  Pamela S Gallagher; Madeline Larkin; Gobi Thillainadesan; Jothy Dhakshnamoorthy; Vanivilasini Balachandran; Hua Xiao; Christopher Wellman; Raghunath Chatterjee; David Wheeler; Shiv I S Grewal
Journal:  Nat Struct Mol Biol       Date:  2018-04-23       Impact factor: 15.369

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  1 in total

1.  Slow Adaptive Response of Budding Yeast Cells to Stable Conditions of Continuous Culture Can Occur without Genome Modifications.

Authors:  Joanna Klim; Urszula Zielenkiewicz; Anna Kurlandzka; Szymon Kaczanowski; Marek Skoneczny
Journal:  Genes (Basel)       Date:  2020-11-27       Impact factor: 4.096

  1 in total

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