Literature DB >> 31597481

Transcriptional profiling of the murine intervertebral disc and age-associated changes in the nucleus pulposus.

Matthew A Veras1, Matthew R McCann1,2, Neil A Tenn1, Cheryle A Séguin1.   

Abstract

Purpose/Aim: The intervertebral disc (IVD) is composed of cell types whose subtle phenotypic differences allow for the formation of distinct tissues. The role of the nucleus pulposus (NP) in the initiation and progression of IVD degeneration is well established; however, the genes and pathways associated with NP degeneration are poorly characterized.Materials and
Methods: Using a genetic strategy for IVD lineage-specific fluorescent reporter expression to isolate cells, gene expression and bioinformatic analysis was conducted on the murine NP at 2.5, 6, and 21 months-of-age and the annulus fibrosus (AF) at 2.5 and 6 months-of-age. A subset of differentially regulated genes was validated by qRT-PCR.
Results: Transcriptome analysis identified distinct profiles of NP and AF gene expression that were remarkably consistent at 2.5 and 6 months-of-age. Prg4, Cilp, Ibsp and Comp were increased >50-fold in the AF relative to NP. The most highly enriched NP genes included Dsc3 and Cdh6, members of the cadherin superfamily, and microRNAs mir218-1 and mir490. Changes in the NP between 2.5 and 6 months-of-age were associated with up-regulation of molecular functions linked to laminin and Bmp receptor binding (including up-regulation of Bmp5 & 7), with the most up-regulated genes being Mir703, Shh, and Sfrp5. NP degeneration was associated with molecular functions linked to alpha-actinin binding (including up-regulation of Ttn & Myot) and cytoskeletal protein binding, with the overall most up-regulated genes being Rnu3a, Snora2b and Mir669h.Conclusions: This study provided insight into the phenotypes of NP and AF cells, and identified candidate pathways that may regulate degeneration.

Entities:  

Keywords:  Nucleus pulposus; annulus fibrosus; bioinformatics; intervertebral disc; transcriptional profiling

Mesh:

Year:  2019        PMID: 31597481     DOI: 10.1080/03008207.2019.1665034

Source DB:  PubMed          Journal:  Connect Tissue Res        ISSN: 0300-8207            Impact factor:   3.417


  12 in total

1.  DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics.

Authors:  Vivian Tam; Peikai Chen; Anita Yee; Nestor Solis; Theo Klein; Mateusz Kudelko; Rakesh Sharma; Wilson Cw Chan; Christopher M Overall; Lisbet Haglund; Pak C Sham; Kathryn Song Eng Cheah; Danny Chan
Journal:  Elife       Date:  2020-12-31       Impact factor: 8.140

2.  TAK-242 treatment and its effect on mechanical properties and gene expression associated with IVD degeneration in SPARC-null mice.

Authors:  Mitchel C Whittal; Sarah J Poynter; Kayla Samms; K Josh Briar; Sabrina I Sinopoli; Magali Millecamps; Laura S Stone; Stephanie J DeWitte-Orr; Diane E Gregory
Journal:  Eur Spine J       Date:  2022-07-11       Impact factor: 2.721

3.  The effects of rivaroxaban, an oral anticoagulant, on human IVD primary cultures.

Authors:  Tezcan Caliskan; Hande Akalan; Ibrahim Yilmaz; Numan Karaarslan; Duygu Yasar Sirin; Hanefi Ozbek
Journal:  Arch Med Sci       Date:  2021-05-09       Impact factor: 3.707

Review 4.  Importance of Matrix Cues on Intervertebral Disc Development, Degeneration, and Regeneration.

Authors:  Matthew J Kibble; Marco Domingos; Judith A Hoyland; Stephen M Richardson
Journal:  Int J Mol Sci       Date:  2022-06-21       Impact factor: 6.208

5.  Single-cell RNA-seq identifies unique transcriptional landscapes of human nucleus pulposus and annulus fibrosus cells.

Authors:  Lorenzo M Fernandes; Nazir M Khan; Camila M Trochez; Meixue Duan; Martha E Diaz-Hernandez; Steven M Presciutti; Greg Gibson; Hicham Drissi
Journal:  Sci Rep       Date:  2020-09-17       Impact factor: 4.379

6.  The Role of Panx3 in Age-Associated and Injury-Induced Intervertebral Disc Degeneration.

Authors:  Meaghan Serjeant; Paxton M Moon; Diana Quinonez; Silvia Penuela; Frank Beier; Cheryle A Séguin
Journal:  Int J Mol Sci       Date:  2021-01-22       Impact factor: 5.923

Review 7.  Pannexin 3 channels in health and disease.

Authors:  Brooke L O'Donnell; Silvia Penuela
Journal:  Purinergic Signal       Date:  2021-07-12       Impact factor: 3.765

8.  The Cellular Composition of Bovine Coccygeal Intervertebral Discs: A Comprehensive Single-Cell RNAseq Analysis.

Authors:  Martina Calió; Benjamin Gantenbein; Marcel Egli; Lucy Poveda; Fabian Ille
Journal:  Int J Mol Sci       Date:  2021-05-06       Impact factor: 5.923

9.  Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus.

Authors:  Mandy J Peffers; Tim J M Welting; Ellen G J Ripmeester; Marjolein M J Caron; G G H van den Akker; Don A M Surtel; Andy Cremers; Panagiotis Balaskas; Philip Dyer; Bas A C Housmans; Alzbeta Chabronova; Aibek Smagul; Yongxiang Fang; Lodewijk W van Rhijn
Journal:  Sci Rep       Date:  2020-08-10       Impact factor: 4.379

10.  A step-by-step protocol for isolation of murine nucleus pulposus cells.

Authors:  Andrew Bratsman; Greig Couasnay; Florent Elefteriou
Journal:  JOR Spine       Date:  2019-12-19
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