Literature DB >> 31594501

Bark coverage shifts assembly processes of microbial decomposer communities in dead wood.

Jonas Hagge1,2, Claus Bässler3,2, Axel Gruppe1, Björn Hoppe4,5, Harald Kellner6, Franz-Sebastian Krah2,7, Jörg Müller2,8, Sebastian Seibold3, Elisa Stengel8, Simon Thorn8.   

Abstract

Bark protects living trees against environmental influences but may promote wood decomposition by fungi and bacteria after tree death. However, the mechanisms by which bark determines the assembly process and biodiversity of decomposers remain unknown. Therefore, we partially or completely removed bark from experimentally felled trees and tested with null modelling whether assembly processes were determined by bark coverage and if biodiversity of molecularly sampled fungi and bacteria generally benefited from increasing bark cover. The community composition of fungi, wood-decaying fungi (subset of all fungi) and bacteria clearly separated between completely debarked, partly debarked and control trees. Bacterial species richness was higher on control trees than on either partly or completely debarked trees, whereas the species richness of all fungi did not differ. However, the species richness of wood-decaying fungi was higher on partially and completely debarked trees than on control trees. Deterministic assembly processes were most important in completely debarked trees, a pattern consistent for fungi and bacteria. Our findings suggest that human disturbances in forests shift the dominant assembly mechanism from stochastic to deterministic processes and thus alter the diversity of wood-inhabiting microorganisms.

Entities:  

Keywords:  assembly processes; dead wood decomposition; stochasticity; tree bark; wood-inhabiting bacteria; wood-inhabiting fungi

Mesh:

Year:  2019        PMID: 31594501      PMCID: PMC6790774          DOI: 10.1098/rspb.2019.1744

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  34 in total

1.  Stochastic and deterministic assembly processes in subsurface microbial communities.

Authors:  James C Stegen; Xueju Lin; Allan E Konopka; James K Fredrickson
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

2.  New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

Authors:  Katarina Ihrmark; Inga T M Bödeker; Karelyn Cruz-Martinez; Hanna Friberg; Ariana Kubartova; Jessica Schenck; Ylva Strid; Jan Stenlid; Mikael Brandström-Durling; Karina E Clemmensen; Björn D Lindahl
Journal:  FEMS Microbiol Ecol       Date:  2012-07-27       Impact factor: 4.194

3.  Assembly history dictates ecosystem functioning: evidence from wood decomposer communities.

Authors:  Tadashi Fukami; Ian A Dickie; J Paula Wilkie; Barbara C Paulus; Duckchul Park; Andrea Roberts; Peter K Buchanan; Robert B Allen
Journal:  Ecol Lett       Date:  2010-04-16       Impact factor: 9.492

4.  Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Authors:  Patrick D Schloss; Sarah L Westcott; Thomas Ryabin; Justine R Hall; Martin Hartmann; Emily B Hollister; Ryan A Lesniewski; Brian B Oakley; Donovan H Parks; Courtney J Robinson; Jason W Sahl; Blaz Stres; Gerhard G Thallinger; David J Van Horn; Carolyn F Weber
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

5.  Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale.

Authors:  Tancredi Caruso; Yuki Chan; Donnabella C Lacap; Maggie C Y Lau; Christopher P McKay; Stephen B Pointing
Journal:  ISME J       Date:  2011-03-03       Impact factor: 10.302

6.  Bacteria inhabiting deadwood of 13 tree species are heterogeneously distributed between sapwood and heartwood.

Authors:  Julia Moll; Harald Kellner; Sabrina Leonhardt; Elisa Stengel; Andreas Dahl; Claus Bässler; François Buscot; Martin Hofrichter; Björn Hoppe
Journal:  Environ Microbiol       Date:  2018-09-17       Impact factor: 5.491

7.  Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Authors:  J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; James Huntley; Noah Fierer; Sarah M Owens; Jason Betley; Louise Fraser; Markus Bauer; Niall Gormley; Jack A Gilbert; Geoff Smith; Rob Knight
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

8.  A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies.

Authors:  Björn Hoppe; Krüger Krger; Tiemo Kahl; Tobias Arnstadt; François Buscot; Jürgen Bauhus; Tesfaye Wubet
Journal:  Sci Rep       Date:  2015-04-08       Impact factor: 4.379

9.  Higher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forest.

Authors:  Chunyan Yang; Douglas A Schaefer; Weijie Liu; Viorel D Popescu; Chenxue Yang; Xiaoyang Wang; Chunying Wu; Douglas W Yu
Journal:  Sci Rep       Date:  2016-08-24       Impact factor: 4.379

10.  Univariate Community Assembly Analysis (UniCAA): Combining hierarchical models with null models to test the influence of spatially restricted dispersal, environmental filtering, and stochasticity on community assembly.

Authors:  Markus A K Sydenham; Stein R Moe; Mari Steinert; Katrine Eldegard
Journal:  Ecol Evol       Date:  2019-01-13       Impact factor: 2.912

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  2 in total

1.  Fungal diversity in shade-coffee plantations in Soconusco, Mexico.

Authors:  Eugenia Zarza; Alejandra López-Pastrana; Anne Damon; Karina Guillén-Navarro; Luz Verónica García-Fajardo
Journal:  PeerJ       Date:  2022-06-29       Impact factor: 3.061

2.  Quantifying wood decomposition by insects and fungi using computed tomography scanning and machine learning.

Authors:  Jörg Müller; Oliver Mitesser; Sebastian Seibold; Sebastian Allner; Marian Willner; Petr Baldrian; Michael D Ulyshen; Roland Brandl; Claus Bässler; Jonas Hagge
Journal:  Sci Rep       Date:  2022-09-27       Impact factor: 4.996

  2 in total

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