Literature DB >> 31593192

Type II non-ribosomal peptide synthetase proteins: structure, mechanism, and protein-protein interactions.

Matt J Jaremko1, Tony D Davis1, Joshua C Corpuz1, Michael D Burkart1.   

Abstract

Covering: 1990 to 2019 Many medicinally-relevant compounds are derived from non-ribosomal peptide synthetase (NRPS) products. Type I NRPSs are organized into large modular complexes, while type II NRPS systems contain standalone or minimal domains that often encompass specialized tailoring enzymes that produce bioactive metabolites. Protein-protein interactions and communication between the type II biosynthetic machinery and various downstream pathways are critical for efficient metabolite production. Importantly, the architecture of type II NRPS proteins makes them ideal targets for combinatorial biosynthesis and metabolic engineering. Future investigations exploring the molecular basis or protein-protein recognition in type II NRPS pathways will guide these engineering efforts. In this review, we consolidate the broad range of NRPS systems containing type II proteins and focus on structural investigations, enzymatic mechanisms, and protein-protein interactions important to unraveling pathways that produce unique metabolites, including dehydrogenated prolines, substituted benzoic acids, substituted amino acids, and cyclopropanes.

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Year:  2020        PMID: 31593192      PMCID: PMC7101270          DOI: 10.1039/c9np00047j

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  186 in total

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Authors:  J Orjala; W H Gerwick
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  Characterization of the aminocarboxycyclopropane-forming enzyme CmaC.

Authors:  Wendy L Kelly; Michael T Boyne; Ellen Yeh; David A Vosburg; Danica P Galonić; Neil L Kelleher; Christopher T Walsh
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

Review 3.  Total biosynthesis: in vitro reconstitution of polyketide and nonribosomal peptide pathways.

Authors:  Elizabeth S Sattely; Michael A Fischbach; Christopher T Walsh
Journal:  Nat Prod Rep       Date:  2008-05-23       Impact factor: 13.423

4.  Substrate placement influences reactivity in non-heme Fe(II) halogenases and hydroxylases.

Authors:  Heather J Kulik; Catherine L Drennan
Journal:  J Biol Chem       Date:  2013-02-28       Impact factor: 5.157

5.  Subcloning, expression, and purification of the enterobactin biosynthetic enzyme 2,3-dihydroxybenzoate-AMP ligase: demonstration of enzyme-bound (2,3-dihydroxybenzoyl)adenylate product.

Authors:  F Rusnak; W S Faraci; C T Walsh
Journal:  Biochemistry       Date:  1989-08-22       Impact factor: 3.162

6.  Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite.

Authors:  Ivonne Höfer; Max Crüsemann; Markus Radzom; Bernadette Geers; Daniel Flachshaar; Xiaofeng Cai; Axel Zeeck; Jörn Piel
Journal:  Chem Biol       Date:  2011-03-25

7.  Novobiocin biosynthesis: inactivation of the putative regulatory gene novE and heterologous expression of genes involved in aminocoumarin ring formation.

Authors:  Alessandra S Eustáquio; Thomas Luft; Zhao-Xin Wang; Bertolt Gust; Keith F Chater; Shu-Ming Li; Lutz Heide
Journal:  Arch Microbiol       Date:  2003-05-08       Impact factor: 2.552

8.  The biosynthetic gene cluster for coronamic acid, an ethylcyclopropyl amino acid, contains genes homologous to amino acid-activating enzymes and thioesterases.

Authors:  M Ullrich; C L Bender
Journal:  J Bacteriol       Date:  1994-12       Impact factor: 3.490

9.  Analysis of the indanomycin biosynthetic gene cluster from Streptomyces antibioticus NRRL 8167.

Authors:  Chaoxuan Li; Kathryn E Roege; Wendy L Kelly
Journal:  Chembiochem       Date:  2009-04-17       Impact factor: 3.164

10.  The siderophore yersiniabactin binds copper to protect pathogens during infection.

Authors:  Kaveri S Chaturvedi; Chia S Hung; Jan R Crowley; Ann E Stapleton; Jeffrey P Henderson
Journal:  Nat Chem Biol       Date:  2012-07-08       Impact factor: 15.040

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Journal:  ACS Chem Biol       Date:  2020-07-29       Impact factor: 5.100

2.  Amino acid (acyl carrier protein) ligase-associated biosynthetic gene clusters reveal unexplored biosynthetic potential.

Authors:  Vesna Simunović; Ivan Grubišić
Journal:  Mol Genet Genomics       Date:  2022-10-22       Impact factor: 2.980

Review 3.  The inherent flexibility of type I non-ribosomal peptide synthetase multienzymes drives their catalytic activities.

Authors:  Sarah Bonhomme; Andréa Dessen; Pauline Macheboeuf
Journal:  Open Biol       Date:  2021-05-26       Impact factor: 6.411

4.  A System for the Evolution of Protein-Protein Interaction Inducers.

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Journal:  ACS Synth Biol       Date:  2021-07-28       Impact factor: 5.249

5.  Dynamic visualization of type II peptidyl carrier protein recognition in pyoluteorin biosynthesis.

Authors:  Joshua C Corpuz; Larissa M Podust; Tony D Davis; Matt J Jaremko; Michael D Burkart
Journal:  RSC Chem Biol       Date:  2020-03-24

Review 6.  Protein-protein interface analysis of the non-ribosomal peptide synthetase peptidyl carrier protein and enzymatic domains.

Authors:  Joshua C Corpuz; Javier O Sanlley; Michael D Burkart
Journal:  Synth Syst Biotechnol       Date:  2022-02-16

7.  Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya.

Authors:  Nicole Hugouvieux-Cotte-Pattat; Monique Royer; Erwan Gueguen; Paul Le Guen; Roderich D Süssmuth; Sylvie Reverchon; Stéphane Cociancich
Journal:  Environ Microbiol       Date:  2022-01-10       Impact factor: 5.476

8.  Identification of protein-protein interaction associated functions based on gene ontology and KEGG pathway.

Authors:  Lili Yang; Yu-Hang Zhang; FeiMing Huang; ZhanDong Li; Tao Huang; Yu-Dong Cai
Journal:  Front Genet       Date:  2022-09-12       Impact factor: 4.772

Review 9.  Salicylic Acid Biosynthesis and Metabolism: A Divergent Pathway for Plants and Bacteria.

Authors:  Awdhesh Kumar Mishra; Kwang-Hyun Baek
Journal:  Biomolecules       Date:  2021-05-09

10.  Food-Poisoning Bacteria Employ a Citrate Synthase and a Type II NRPS To Synthesize Bolaamphiphilic Lipopeptide Antibiotics*.

Authors:  Benjamin Dose; Claudia Ross; Sarah P Niehs; Kirstin Scherlach; Johanna P Bauer; Christian Hertweck
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-21       Impact factor: 15.336

  10 in total

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