Literature DB >> 31592519

Big Data Analysis on Puerto Rico Testsite for Exploring Contamination Threats.

Xiangyu Li1, Leiming Yu2, David Kaeli3, Yuanyuan Yao4, Poguang Wang5, Roger Giese6, Akram Alshawabkeh7.   

Abstract

In this paper, we present the use of Principal Component Analysis and customized software, to accelerate the spectral analysis of biological samples. The work is part of the mission of the National Institute of Environmental Health Sciences sponsored Puerto Rico Testsite for Exploring Contamination Threats Center, establishing linkages between environmental pollutants and preterm birth. This paper provides an overview of the data repository developed for the Center, and presents a use case analysis of biological sample data maintained in the database system.

Entities:  

Keywords:  environmental health; non-targeted analysis; principal component analysis

Year:  2015        PMID： 31592519      PMCID： PMC6779058     

Source DB:  PubMed          Journal:  Alldata        ISSN： 2519-8386


  10 in total

1.  Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry.

Authors:  Robert Plumb; Jose Castro-Perez; Jennifer Granger; Iain Beattie; Karine Joncour; Andrew Wright
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

2.  MALDIquant: a versatile R package for the analysis of mass spectrometry data.

Authors:  Sebastian Gibb; Korbinian Strimmer
Journal:  Bioinformatics       Date:  2012-07-12       Impact factor: 6.937

3.  National, regional, and worldwide estimates of preterm birth rates in the year 2010 with time trends since 1990 for selected countries: a systematic analysis and implications.

Authors:  Hannah Blencowe; Simon Cousens; Mikkel Z Oestergaard; Doris Chou; Ann-Beth Moller; Rajesh Narwal; Alma Adler; Claudia Vera Garcia; Sarah Rohde; Lale Say; Joy E Lawn
Journal:  Lancet       Date:  2012-06-09       Impact factor: 79.321

4.  ProteoWizard: open source software for rapid proteomics tools development.

Authors:  Darren Kessner; Matt Chambers; Robert Burke; David Agus; Parag Mallick
Journal:  Bioinformatics       Date:  2008-07-07       Impact factor: 6.937

5.  Bisphenol a exposure in Mexico City and risk of prematurity: a pilot nested case control study.

Authors:  David Cantonwine; John D Meeker; Howard Hu; Brisa N Sánchez; Héctor Lamadrid-Figueroa; Adriana Mercado-García; Gamola Z Fortenberry; Antonia M Calafat; Martha Maria Téllez-Rojo
Journal:  Environ Health       Date:  2010-10-18       Impact factor: 5.984

Review 6.  Exposure to environmental endocrine disruptors and child development.

Authors:  John D Meeker
Journal:  Arch Pediatr Adolesc Med       Date:  2012-10

7.  Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis.

Authors:  Masahiro Sugimoto; Masato Kawakami; Martin Robert; Tomoyoshi Soga; Masaru Tomita
Journal:  Curr Bioinform       Date:  2012-03       Impact factor: 3.543

8.  Long-term effects of polychlorinated biphenyls and dioxins on pregnancy outcomes in women affected by the Yusho incident.

Authors:  Kiyomi Tsukimori; Shoji Tokunaga; Satoko Shibata; Hiroshi Uchi; Daisuke Nakayama; Tadayuki Ishimaru; Hitoo Nakano; Norio Wake; Takesumi Yoshimura; Masutaka Furue
Journal:  Environ Health Perspect       Date:  2008-05       Impact factor: 9.031

9.  Evaluation of contaminated drinking water and preterm birth, small for gestational age, and birth weight at Marine Corps Base Camp Lejeune, North Carolina: a cross-sectional study.

Authors:  Perri Zeitz Ruckart; Frank J Bove; Morris Maslia
Journal:  Environ Health       Date:  2014-11-20       Impact factor: 5.984

10.  Urinary phthalate metabolites in relation to preterm birth in Mexico city.

Authors:  John D Meeker; Howard Hu; David E Cantonwine; Hector Lamadrid-Figueroa; Antonia M Calafat; Adrienne S Ettinger; Mauricio Hernandez-Avila; Rita Loch-Caruso; Martha María Téllez-Rojo
Journal:  Environ Health Perspect       Date:  2009-06-16       Impact factor: 9.031
  10 in total

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