Literature DB >> 22796955

MALDIquant: a versatile R package for the analysis of mass spectrometry data.

Sebastian Gibb1, Korbinian Strimmer.   

Abstract

UNLABELLED: MALDIquant is an R package providing a complete and modular analysis pipeline for quantitative analysis of mass spectrometry data. MALDIquant is specifically designed with application in clinical diagnostics in mind and implements sophisticated routines for importing raw data, preprocessing, non-linear peak alignment and calibration. It also handles technical replicates as well as spectra with unequal resolution. AVAILABILITY: MALDIquant and its associated R packages readBrukerFlexData and readMzXmlData are freely available from the R archive CRAN (http://cran.r-project.org). The software is distributed under the GNU General Public License (version 3 or later) and is accompanied by example files and data. Additional documentation is available from http://strimmerlab.org/software/maldiquant/.

Mesh:

Year:  2012        PMID: 22796955     DOI: 10.1093/bioinformatics/bts447

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  143 in total

1.  Classifying neuronal subclasses of the cerebellum through constellation pharmacology.

Authors:  Kigen J Curtice; Lee S Leavitt; Kevin Chase; Shrinivasan Raghuraman; Martin P Horvath; Baldomero M Olivera; Russell W Teichert
Journal:  J Neurophysiol       Date:  2015-11-18       Impact factor: 2.714

2.  TRPA1 expression levels and excitability brake by KV channels influence cold sensitivity of TRPA1-expressing neurons.

Authors:  Tosifa Memon; Kevin Chase; Lee S Leavitt; Baldomero M Olivera; Russell W Teichert
Journal:  Neuroscience       Date:  2017-04-10       Impact factor: 3.590

3.  Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes.

Authors:  J S Jung; T Eberl; K Sparbier; C Lange; M Kostrzewa; S Schubert; A Wieser
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-12-14       Impact factor: 3.267

4.  MALDI biotyper-based rapid resistance detection by stable-isotope labeling.

Authors:  Katrin Sparbier; Christoph Lange; Jette Jung; Andreas Wieser; Sören Schubert; Markus Kostrzewa
Journal:  J Clin Microbiol       Date:  2013-09-04       Impact factor: 5.948

5.  MALDI-TOF-MS with PLS Modeling Enables Strain Typing of the Bacterial Plant Pathogen Xanthomonas axonopodis.

Authors:  Nathan M Sindt; Faith Robison; Mark A Brick; Howard F Schwartz; Adam L Heuberger; Jessica E Prenni
Journal:  J Am Soc Mass Spectrom       Date:  2017-11-27       Impact factor: 3.109

6.  Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid detection of β-lactam resistance in Enterobacteriaceae derived from blood cultures.

Authors:  Jette Sophia Jung; Christina Popp; Katrin Sparbier; Christoph Lange; Markus Kostrzewa; Soeren Schubert
Journal:  J Clin Microbiol       Date:  2014-01-08       Impact factor: 5.948

7.  A Comparison of Tissue Spray and Lipid Extract Direct Injection Electrospray Ionization Mass Spectrometry for the Differentiation of Eutopic and Ectopic Endometrial Tissues.

Authors:  Vitaliy Chagovets; Zhihao Wang; Alexey Kononikhin; Natalia Starodubtseva; Anna Borisova; Dinara Salimova; Igor Popov; Andrey Kozachenko; Konstantin Chingin; Huanwen Chen; Vladimir Frankevich; Leila Adamyan; Gennady Sukhikh
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-27       Impact factor: 3.109

8.  CylA is a sequence-specific protease involved in toxin biosynthesis.

Authors:  Weixin Tang; Silvia C Bobeica; Li Wang; Wilfred A van der Donk
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-27       Impact factor: 3.346

9.  Male Scent Gland Signals Mating Status in Greater Spear-Nosed Bats, Phyllostomus hastatus.

Authors:  Danielle M Adams; Yue Li; Gerald S Wilkinson
Journal:  J Chem Ecol       Date:  2018-08-04       Impact factor: 2.626

10.  Whole Cell MALDI Fingerprinting Is a Robust Tool for Differential Profiling of Two-Component Mammalian Cell Mixtures.

Authors:  Valentina Z Petukhova; Alexandria N Young; Jian Wang; Mingxun Wang; Andras Ladanyi; Rajul Kothari; Joanna E Burdette; Laura M Sanchez
Journal:  J Am Soc Mass Spectrom       Date:  2018-10-23       Impact factor: 3.109

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