Literature DB >> 31591222

Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors.

Akash J Patel1,2, Ying-Wooi Wan3,4, Rami Al-Ouran2,5, Jean-Pierre Revelli2,4, Maria F Cardenas6, Mazen Oneissi1,2, Liu Xi6, Ali Jalali1, John F Magnotti1, Donna M Muzny6, HarshaVardhan Doddapaneni6, Sherly Sebastian1, Kent A Heck7, J Clay Goodman7, Shankar P Gopinath1, Zhandong Liu2,5, Ganesh Rao8, Sharon E Plon4,5, Daniel Yoshor1,9, David A Wheeler6, Huda Y Zoghbi3,4,5,9,10, Tiemo J Klisch3,4.   

Abstract

Meningiomas account for one-third of all primary brain tumors. Although typically benign, about 20% of meningiomas are aggressive, and despite the rigor of the current histopathological classification system there remains considerable uncertainty in predicting tumor behavior. Here, we analyzed 160 tumors from all 3 World Health Organization (WHO) grades (I through III) using clinical, gene expression, and sequencing data. Unsupervised clustering analysis identified 3 molecular types (A, B, and C) that reliably predicted recurrence. These groups did not directly correlate with the WHO grading system, which classifies more than half of the tumors in the most aggressive molecular type as benign. Transcriptional and biochemical analyses revealed that aggressive meningiomas involve loss of the repressor function of the DREAM complex, which results in cell-cycle activation; only tumors in this category tend to recur after full resection. These findings should improve our ability to predict recurrence and develop targeted treatments for these clinically challenging tumors.

Entities:  

Keywords:  NF2; PRC2; brain tumor; classification; oncogenesis

Year:  2019        PMID: 31591222      PMCID: PMC6815170          DOI: 10.1073/pnas.1912858116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Epigenetic temporal control of mouse Hox genes in vivo.

Authors:  Natalia Soshnikova; Denis Duboule
Journal:  Science       Date:  2009-06-05       Impact factor: 47.728

2.  Statistical Significance of Clustering using Soft Thresholding.

Authors:  Hanwen Huang; Yufeng Liu; Ming Yuan; J S Marron
Journal:  J Comput Graph Stat       Date:  2015-12-10       Impact factor: 2.302

Review 3.  Meningiomas: knowledge base, treatment outcomes, and uncertainties. A RANO review.

Authors:  Leland Rogers; Igor Barani; Marc Chamberlain; Thomas J Kaley; Michael McDermott; Jeffrey Raizer; David Schiff; Damien C Weber; Patrick Y Wen; Michael A Vogelbaum
Journal:  J Neurosurg       Date:  2015-01       Impact factor: 5.115

4.  Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.

Authors:  Roel G W Verhaak; Katherine A Hoadley; Elizabeth Purdom; Victoria Wang; Yuan Qi; Matthew D Wilkerson; C Ryan Miller; Li Ding; Todd Golub; Jill P Mesirov; Gabriele Alexe; Michael Lawrence; Michael O'Kelly; Pablo Tamayo; Barbara A Weir; Stacey Gabriel; Wendy Winckler; Supriya Gupta; Lakshmi Jakkula; Heidi S Feiler; J Graeme Hodgson; C David James; Jann N Sarkaria; Cameron Brennan; Ari Kahn; Paul T Spellman; Richard K Wilson; Terence P Speed; Joe W Gray; Matthew Meyerson; Gad Getz; Charles M Perou; D Neil Hayes
Journal:  Cancer Cell       Date:  2010-01-19       Impact factor: 31.743

5.  DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly.

Authors:  Larisa Litovchick; Laurence A Florens; Selene K Swanson; Michael P Washburn; James A DeCaprio
Journal:  Genes Dev       Date:  2011-04-15       Impact factor: 11.361

6.  Hitting a moving target: evolution of a treatment paradigm for atypical meningiomas amid changing diagnostic criteria.

Authors:  Blake E Pearson; James M Markert; Winfield S Fisher; Barton L Guthrie; John B Fiveash; Cheryl A Palmer; Kristen Riley
Journal:  Neurosurg Focus       Date:  2008       Impact factor: 4.047

Review 7.  The DREAM complex: master coordinator of cell cycle-dependent gene expression.

Authors:  Subhashini Sadasivam; James A DeCaprio
Journal:  Nat Rev Cancer       Date:  2013-07-11       Impact factor: 60.716

8.  Integrated genomic analyses of ovarian carcinoma.

Authors: 
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

9.  Hidden among the crowd: differential DNA methylation-expression correlations in cancer occur at important oncogenic pathways.

Authors:  Adrián Mosquera Orgueira
Journal:  Front Genet       Date:  2015-05-13       Impact factor: 4.599

10.  An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures.

Authors:  Grace Collord; Patrick Tarpey; Natalja Kurbatova; Inigo Martincorena; Sebastian Moran; Manuel Castro; Tibor Nagy; Graham Bignell; Francesco Maura; Matthew D Young; Jorge Berna; Jose M C Tubio; Chris E McMurran; Adam M H Young; Mathijs Sanders; Imran Noorani; Stephen J Price; Colin Watts; Elke Leipnitz; Matthias Kirsch; Gabriele Schackert; Danita Pearson; Abel Devadass; Zvi Ram; V Peter Collins; Kieren Allinson; Michael D Jenkinson; Rasheed Zakaria; Khaja Syed; C Oliver Hanemann; Jemma Dunn; Michael W McDermott; Ramez W Kirollos; George S Vassiliou; Manel Esteller; Sam Behjati; Alvis Brazma; Thomas Santarius; Ultan McDermott
Journal:  Sci Rep       Date:  2018-09-10       Impact factor: 4.379

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  33 in total

1.  Identification of novel fusion transcripts in meningioma.

Authors:  A Basit Khan; Ron Gadot; Arya Shetty; James C Bayley; Caroline C Hadley; Maria F Cardenas; Ali Jalali; Akdes S Harmanci; Arif O Harmanci; David A Wheeler; Tiemo J Klisch; Akash J Patel
Journal:  J Neurooncol       Date:  2020-09-19       Impact factor: 4.130

2.  Comparative clinical and genomic analysis of neurofibromatosis type 2-associated cranial and spinal meningiomas.

Authors:  Alexander Pemov; Ramita Dewan; Nancy F Hansen; Settara C Chandrasekharappa; Abhik Ray-Chaudhury; Kristine Jones; Wen Luo; John D Heiss; James C Mullikin; Prashant Chittiboina; Douglas R Stewart; Ashok R Asthagiri
Journal:  Sci Rep       Date:  2020-07-28       Impact factor: 4.379

3.  Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2.

Authors:  Taylor P Enrico; Wayne Stallaert; Elizaveta T Wick; Peter Ngoi; Xianxi Wang; Seth M Rubin; Nicholas G Brown; Jeremy E Purvis; Michael J Emanuele
Journal:  Elife       Date:  2021-12-01       Impact factor: 8.140

4.  Intratumor and informatic heterogeneity influence meningioma molecular classification.

Authors:  Abrar Choudhury; Stephanie Hilz; Stephen T Magill; David R Raleigh; Harish N Vasudevan; Javier E Villanueva-Meyer; William C Chen; Calixto-Hope G Lucas; Steve E Braunstein; Nancy Ann Oberheim Bush; Nicholas Butowski; Melike Pekmezci; Michael W McDermott; Arie Perry; David A Solomon
Journal:  Acta Neuropathol       Date:  2022-06-27       Impact factor: 15.887

5.  Landscape of genetic variants in sporadic meningiomas captured with clinical genomics.

Authors:  Nathan K Leclair; Erica Shen; Qian Wu; Leo Wolansky; Kevin Becker; Lei Li; Ketan R Bulsara
Journal:  Acta Neurochir (Wien)       Date:  2022-07-26       Impact factor: 2.816

6.  Clinicopathologic Characteristics of Grade 2/3 Meningiomas: A Perspective on the Role of Next-Generation Sequencing.

Authors:  Junhyung Kim; Kihwan Hwang; Hyun Jung Kwon; Ji Eun Lee; Kyu Sang Lee; Gheeyoung Choe; Jung Ho Han; Chae-Yong Kim
Journal:  Front Oncol       Date:  2022-06-13       Impact factor: 5.738

7.  NF2 Alteration/22q Loss Is Associated with Recurrence in WHO Grade 1 Sphenoid Wing Meningiomas.

Authors:  Yu Sakai; Satoru Miyawaki; Yu Teranishi; Atsushi Okano; Kenta Ohara; Hiroki Hongo; Daiichiro Ishigami; Daisuke Shimada; Jun Mitsui; Hirofumi Nakatomi; Nobuhito Saito
Journal:  Cancers (Basel)       Date:  2022-06-29       Impact factor: 6.575

Review 8.  Meningiomas from a developmental perspective: exploring the crossroads between meningeal embryology and tumorigenesis.

Authors:  Julien Boetto; Matthieu Peyre; Michel Kalamarides
Journal:  Acta Neurochir (Wien)       Date:  2020-11-20       Impact factor: 2.216

9.  Roles for hENT1 and dCK in gemcitabine sensitivity and malignancy of meningioma.

Authors:  Masahiro Yamamoto; Tomomi Sanomachi; Shuhei Suzuki; Hiroyuki Uchida; Hajime Yonezawa; Nayuta Higa; Tomoko Takajo; Yuki Yamada; Asuka Sugai; Keita Togashi; Shizuka Seino; Masashi Okada; Yukihiko Sonoda; Hirofumi Hirano; Koji Yoshimoto; Chifumi Kitanaka
Journal:  Neuro Oncol       Date:  2021-06-01       Impact factor: 12.300

10.  Newly established patient-derived organoid model of intracranial meningioma.

Authors:  Shintaro Yamazaki; Fumiharu Ohka; Masaki Hirano; Yukihiro Shiraki; Kazuya Motomura; Kuniaki Tanahashi; Takashi Tsujiuchi; Ayako Motomura; Kosuke Aoki; Keiko Shinjo; Yoshiteru Murofushi; Yotaro Kitano; Sachi Maeda; Akira Kato; Hiroyuki Shimizu; Junya Yamaguchi; Alimu Adilijiang; Toshihiko Wakabayashi; Ryuta Saito; Atsushi Enomoto; Yutaka Kondo; Atsushi Natsume
Journal:  Neuro Oncol       Date:  2021-11-02       Impact factor: 13.029

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