Literature DB >> 31583778

Structural insights into Acyl-coenzyme A binding domain containing 3 (ACBD3) protein hijacking by picornaviruses.

Dominika Chalupska1, Bartosz Różycki2, Martin Klima1, Evzen Boura1.   

Abstract

Many picornaviruses hijack the Golgi resident Acyl-coenzyme A binding domain containing 3 (ACBD3) protein in order to recruit the phosphatidylinositol 4-kinase B (PI4KB) to viral replication organelles (ROs). PI4KB, once recruited and activated by ACBD3 protein, produces the lipid phosphatidylinositol 4-phosphate (PI4P), which is a key step in the biogenesis of viral ROs. To do so, picornaviruses use their small nonstructural protein 3A that binds the Golgi dynamics domain of the ACBD3 protein. Here, we present the analysis of the highly flexible ACBD3 proteins and the viral 3A protein in solution using small-angle X-ray scattering and computer simulations. Our analysis revealed that both the ACBD3 protein and the 3A:ACBD3 protein complex have an extended and flexible conformation in solution.
© 2019 The Protein Society.

Entities:  

Keywords:  ACBD3; RNA virus; coarse-grained simulations; host factor; intrinsically disordered regions; picornavirus; small-angle X-ray scattering (SAXS)

Mesh:

Substances:

Year:  2019        PMID: 31583778      PMCID: PMC6863706          DOI: 10.1002/pro.3738

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  42 in total

1.  The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ.

Authors:  Alexander L Greninger; Giselle M Knudsen; Miguel Betegon; Alma L Burlingame; Joseph L Derisi
Journal:  J Virol       Date:  2012-01-18       Impact factor: 5.103

2.  Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding.

Authors:  Young C Kim; Gerhard Hummer
Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

3.  Golgi protein ACBD3 mediates neurotoxicity associated with Huntington's disease.

Authors:  Juan I Sbodio; Bindu D Paul; Carolyn E Machamer; Solomon H Snyder
Journal:  Cell Rep       Date:  2013-09-05       Impact factor: 9.423

4.  Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum.

Authors:  Bartosz Różycki; Marek Cieplak; Mirjam Czjzek
Journal:  J Struct Biol       Date:  2015-05-23       Impact factor: 2.867

5.  Rational Design of Novel Highly Potent and Selective Phosphatidylinositol 4-Kinase IIIβ (PI4KB) Inhibitors as Broad-Spectrum Antiviral Agents and Tools for Chemical Biology.

Authors:  Ivana Mejdrová; Dominika Chalupská; Pavla Plačková; Christin Müller; Michal Šála; Martin Klíma; Adriana Baumlová; Hubert Hřebabecký; Eliška Procházková; Milan Dejmek; Dmytro Strunin; Jan Weber; Gary Lee; Marika Matoušová; Helena Mertlíková-Kaiserová; John Ziebuhr; Gabriel Birkus; Evzen Boura; Radim Nencka
Journal:  J Med Chem       Date:  2016-12-22       Impact factor: 7.446

6.  Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein.

Authors:  Martin Klima; Dominika Chalupska; Bartosz Różycki; Jana Humpolickova; Lenka Rezabkova; Jan Silhan; Adriana Baumlova; Anna Dubankova; Evzen Boura
Journal:  Structure       Date:  2017-01-05       Impact factor: 5.006

7.  Structural basis of p38α regulation by hematopoietic tyrosine phosphatase.

Authors:  Dana M Francis; Bartosz Różycki; Dorothy Koveal; Gerhard Hummer; Rebecca Page; Wolfgang Peti
Journal:  Nat Chem Biol       Date:  2011-11-06       Impact factor: 15.040

8.  ACBD3-mediated recruitment of PI4KB to picornavirus RNA replication sites.

Authors:  Jun Sasaki; Kumiko Ishikawa; Minetaro Arita; Koki Taniguchi
Journal:  EMBO J       Date:  2011-11-29       Impact factor: 11.598

9.  Structural insights into Acyl-coenzyme A binding domain containing 3 (ACBD3) protein hijacking by picornaviruses.

Authors:  Dominika Chalupska; Bartosz Różycki; Martin Klima; Evzen Boura
Journal:  Protein Sci       Date:  2019-10-17       Impact factor: 6.725

10.  Membrane topography of the hydrophobic anchor sequence of poliovirus 3A and 3AB proteins and the functional effect of 3A/3AB membrane association upon RNA replication.

Authors:  Kentaro Fujita; Shyam S Krishnakumar; David Franco; Aniko V Paul; Erwin London; Eckard Wimmer
Journal:  Biochemistry       Date:  2007-04-07       Impact factor: 3.162

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  4 in total

1.  Conformational ensemble of the full-length SARS-CoV-2 nucleocapsid (N) protein based on molecular simulations and SAXS data.

Authors:  Bartosz Różycki; Evzen Boura
Journal:  Biophys Chem       Date:  2022-06-07       Impact factor: 3.628

2.  Structural insights into Acyl-coenzyme A binding domain containing 3 (ACBD3) protein hijacking by picornaviruses.

Authors:  Dominika Chalupska; Bartosz Różycki; Martin Klima; Evzen Boura
Journal:  Protein Sci       Date:  2019-10-17       Impact factor: 6.725

Review 3.  Emerging Role for Acyl-CoA Binding Domain Containing 3 at Membrane Contact Sites During Viral Infection.

Authors:  Yue Lu; Siqi Song; Leiliang Zhang
Journal:  Front Microbiol       Date:  2020-04-08       Impact factor: 5.640

Review 4.  The function of apolipoproteins L (APOLs): relevance for kidney disease, neurotransmission disorders, cancer and viral infection.

Authors:  Etienne Pays
Journal:  FEBS J       Date:  2020-06-25       Impact factor: 5.542

  4 in total

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