| Literature DB >> 31579244 |
Sumit Rai1, Mukta Tandon2, Narendra Pal Singh2, Vikas Manchanda3, Iqbal Rajinder Kaur2.
Abstract
BACKGROUND: The Clinical and Laboratory Standards Institute recommends reporting minimum inhibitory concentration (MIC) values of vancomycin for Staphylococcus aureus. Commercial MIC strips are expensive, and the traditional broth microdilution method is cumbersome. With this background, we attempted to develop and standardize an in-house agar gradient method to determine MIC values of vancomycin for S. aureus.Entities:
Keywords: AMR; Epsilometer test; antimicrobial testing; in-house agar gradient method; minimum inhibitory concentration; vancomycin
Year: 2019 PMID: 31579244 PMCID: PMC6771310 DOI: 10.4103/JLP.JLP_11_19
Source DB: PubMed Journal: J Lab Physicians ISSN: 0974-2727
Variables for the preliminary considerations for optimization and standardization of the in-house agar gradient strip
| Variations | Preventive actions taken to rule out variations |
|---|---|
| Storage of reference strain | ATCC 29213 was maintained and revived as per the CLSI protocol |
| Purity and age of isolate | Pure isolates from fresh overnight growth from nonselective media were used |
| Identification | Test strains of |
| Bacterial inoculum | Bacterial inoculum with turbidity matched to that of 0.5 McFarland commercially available turbidity standard was used for broth microdilution, commercial, and in-house agar gradient strips as per the CLSI and manufacturer’s instructions |
| Strip dimensions | The length, width, and holes were made at equal dimensions. Thinner, thicker strips or those with holes made at unequal distances were discarded |
| Antibiotic impregnation | |
| Solvent quality | Double-distilled sterile (autoclaved) water was used |
| Antibiotic powder | Vancomycin powder was acquired from the WHO GMP, CE, and ISO 13485-certified company |
| Quantity | Calibrated electronic scale and pipettes used |
| Pipetting errors while impregnating the strip | If the volume of the antibiotic solution in all the eight tips was not equal at the time of aspiration of the antibiotic solution, the tips were readjusted to fit properly to avoid air entry during aspiration. If the impregnated drops were of unequal size after diffusion on the strip, the strip was discarded |
| Storage | Up to ten strips were stored in universal container with rubber washer and a silica desiccator at 2°C–8°C for up to 14 days |
| Shelf life | Being in-house strips, with all the components readily available, shelf life beyond 14 days was not evaluated |
| Observer variations | Specific objective parameters were defined for reading the breakpoint MICs for the in-house strips |
| All MIC readings on the in-house strip were taken by one observer only, and parameters were followed to rule out intraobserver variation | |
| Incubation conditions | 35°C±2°C in ambient air for 24 h |
CLSI=Clinical laboratory standards institute, GMP=Good manufacturing practices, CE=Conformité européene, ISO=International organization for standardization, MIC=Minimum inhibitory concentration
Figure 1The dimensions of the in-house strip and its relative size compared to the commercially available strip placed together on the same plate to avoid inoculum variation
Figure 2How the 8-channel micropipette was used to aspirate 5 μL of antibiotic solution to create a gradient along the strip as in (a) and visual confirmation was done to check equal volume being impregnated on every spot of the strip (arrows) as in (b)
Figure 3How the impregnation was done exactly at the center (arrows) of each point on the strip
Figure 4(a and b) How to take the reading of the strip. If there was growth in hole separating the two breakpoints, the higher breakpoint was considered as the breakpoint minimum inhibitory concentration as in a, there is growth adjacent to 0.5 μg/mL; therefore, the minimum inhibitory concentration is 1 μg/mL. Similar is the case with b
Highlighting data of in-house agar gradient strip optimization and standardization with broth microdilution used a standard reference method followed by poststandardization validation results
| Optimization and standardization result | Poststandardization validation result | ||||||
|---|---|---|---|---|---|---|---|
| Strain | Broth microdilution MIC | Epsilometer test (HiMedia) | In-house strip | Strain | In-house strip | Epsilometer test (HiMedia) | Broth microdilution MIC |
| ATCC 29213 | 0.5, 0.5, 0.5 | 1, 1, 0.5 | 0.5, 1, 0, 5 | ATCC 29213 | 0.5, 0.5, 1 | 0.5, 1, 0.75 | 0.5, 0.5, 0.5 |
| P459May2014 | 0.5 | 2* | 0.5 | P306Jun2014 | 1 | 1.5 | 1 |
| P464May2014 | 0.5 | 2* | 1 | P312Jun2014 | 1 | 1.5 | 1 |
| P467May2014 | 1 | 4* | 4* | P322Jun2014 | 0.5 | 1 | 0.5 |
| P468May2014 | 1 | 3* | 1 | P330Jun2014 | 1 | 1.5 | 1 |
| P470May2014 | 1 | 2 | 0.5 | P337Jun2014 | 0.5 | 1.5 | 1 |
| P474May2014 | 1 | 4* | 1 | P345Jun2014 | 1 | 2* | 0.5 |
| P483May2014 | 0.5 | 3* | 2* | P367Jun2014 | 1 | 1 | 1 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 2, 1, 2* | 1, 1, 1 | P371Jun2014 | 1 | 1.5 | 1 |
| P485May2014 | 2 | 3 | 0.5* | P379Jun2014 | 2* | 1.5* | 0.5 |
| P486May2014 | 1 | 3* | 2 | ATCC 29213 | 0.5, 0.5, 0.5 | 1, 1, 1.5* | 0.5, 0.5, 0.5 |
| P491May2014 | 2 | 4 | 1 | P385Jun2014 | 1 | 1.5 | 1 |
| P497May2014 | 2 | 3 | 1 | P390Jun2014 | 1 | 1.5 | 1 |
| P498May2014 | 0.5 | 4* | 1 | P395Jun2014 | 0.5 | 1 | 0.5 |
| P507May2014 | 0.5 | 4* | 1 | P398Jun2014 | 1 | 1.5 | 1 |
| P516May2014 | 1 | 2 | 1 | P402Jun2014 | 1 | 1.5 | 1 |
| P601May2014 | 1 | 2 | 1 | P408Jun2014 | 1 | 1.5* | 0.5 |
| P610May2014 | 1 | 4* | 1 | P415Jun2014 | 0.5 | 1.5 | 1 |
| P618May2014 | 0.5 | 4* | 1 | P419Jun2014 | 0.5 | 1 | 0.5 |
| P619May2014 | 2 | 4 | 1 | P423Jun2014 | 0.5 | 1 | 1 |
| P622May2014 | 1 | 3* | 1 | ATCC 29213 | 1, 0.5, 1 | 1, 1, 0.5 | 0.5, 0.5, 0.5 |
| P639May2014 | 2 | 4 | 1 | P438Jun2014 | 1 | 1 | 1 |
| P642May2014 | 2 | 3 | 1 | P443Jun2014 | 1 | 1.5 | 1 |
| P643May2014 | 2 | 2 | 1 | P451Jun2014 | 0.5 | 1.5* | 0.5 |
| P644May2014 | 2 | 2 | 1 | P459Jun2014 | 1 | 1.5 | 1 |
| U1269May2014 | 2 | 2 | 1 | P464Jun2014 | 1 | 1.5 | 1 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 3, 2, 3* | 1, 1, 1 | P473Jun2014 | 1 | 1.5* | 0.5 |
| P676May2014 | 0.25 | 1.5* | 1* | P482Jun2014 | 0.5 | 1.5* | 1 |
| P703May2014 | 1 | 0.75 | 4* | P491Jun2014 | 0.5 | 2* | 0.5 |
| P704May2014 | 2 | 1 | 0.5* | P501Jun2014 | 0.5 | 1 | 1 |
| P708May2014 | 1 | 1 | 1 | ATCC 29213 | 0.5, 1, 0.5 | 1, 0.5, 0.5 | 0.5, 0.5, 1 |
| P710May2014 | 0.5 | 1 | 1 | P508Jun2014 | 1 | 1 | 1 |
| P711May2014 | 1 | 1.5 | 1 | P512Jun2014 | 0.5 | 1.5* | 0.5 |
| P717May2014 | 0.5 | 1.5* | 1 | P518Jun2014 | 1 | 1.5 | 1 |
| P718May2014 | 0.5 | 1 | 1 | P523Jun2014 | 1 | 1.5* | 0.5 |
| P720May2014 | 0.5 | 1.5* | 1 | P530Jun2014 | 0.5 | 2* | 0.5 |
| P723May2014 | 1 | 1 | 0.5 | P536Jun2014 | 1 | 2 | 1 |
| P724May2014 | 0.5 | 3* | 1 | P542Jun2014 | 1 | 2 | 1 |
| P729May2014 | 1 | 3* | 1 | P547Jun2014 | 0.5 | 1 | 0.5 |
| P730May2014 | 0.5 | 3* | 1 | P548Jun2014 | 0.5 | 1 | 0.5 |
| P731May2014 | 2 | 2 | 1 | ATCC 29213 | 0.5, 0.5, 0.5 | 0.5, 1, 1 | 0.5, 0.5, 0.5 |
| P735May2014 | 1 | 3* | 1 | P555Jun2014 | 1 | 0.5 | 1 |
| P740May2014 | 1 | 3* | 1 | P561Jun2014 | 1 | 1 | 1 |
| P741May2014 | 0.5 | 3* | 1 | P569Jun2014 | 0.5 | 1 | 1 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 2, 1.5, 1.5* | 0.5, 0.5, 0.5 | P574Jun2014 | 0.5 | 1 | 0.5 |
| P744May2014 | 1 | 3* | 1 | P578Jun2014 | 0.5 | 1.5* | 0.5 |
| P786May2014 | 1 | 2 | 1 | P589Jun2014 | 1 | 1 | 1 |
| P793May2014 | 1 | 1 | 1 | P594Jun2014 | 1 | 1 | 1 |
| P795May2014 | 1 | 1 | 1 | P595Jun2014 | 0.5 | 1 | 1 |
| P798May2014 | 0.5 | 0.75 | 1 | P599Jun2014 | 0.5 | 0.5 | 0.5 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 2, 2, 1.5* | 0.5, 0.5, 1 | ATCC 29213 | 1, 1, 0.5 | 1, 1, 0.5 | 1, 0.5, 0.5 |
| P787Jun2014 | 1 | 1 | 0.5 | P609Jun2014 | 1 | 1 | 1 |
| P802Jun2014 | 1 | 4* | 1 | P615Jun2014 | 1 | 1 | 1 |
| P805Jun2014 | 1 | 1 | 1 | P616Jun2014 | 1 | 1 | 0.5 |
| P807Jun2014 | 2 | 2 | 1 | P620Jun2014 | 1 | 1 | 1 |
| P816Jun2014 | 2 | 3 | 1 | P629Jun2014 | 0.5 | 1 | 0.5 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 1, 1.5, 1.5* | 0.5, 0.5, 0.5 | P637Jun2014 | 0.5 | 1 | 0.5 |
| P1Jun2014 | 1 | 1.5 | 1 | P641Jun2014 | 1 | 2 | 1 |
| P2Jun2014 | 1 | 1.5 | 1 | P649Jun2014 | 0.5 | 1 | 1 |
| P3Jun2014 | 2 | 2 | 1 | P654Jun2014 | 0.5 | 1 | 1 |
| P4Jun2014 | 2 | 2 | 1 | ATCC 29213 | 1, 0.5, 0.5 | 1, 1, 1.5* | 0.5, 0.5, 0.5 |
| P5Jun2014 | 2 | 3 | 1 | P655Jun2014 | 0.5 | 0.5 | 0.5 |
| P24Jun2014 | 1 | 2 | 0.5 | P656Jun2014 | 1 | 1 | 0.5 |
| P25Jun2014 | 0.5 | 1 | 1 | P663Jun2014 | 0.5 | 1 | 0.5 |
| P27Jun2014 | 1 | 1 | 1 | P669Jun2014 | 1 | 2 | 1 |
| P29Jun2014 | 1 | 0.75 | 1 | P673Jun2014 | 1 | 0.5 | 1 |
| P30Jun2014 | 1 | 1.5 | 1 | P681Jun2014 | 0.5 | 1 | 0.5 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 1, 0.5, 1 | 0.5, 0.5, 0.5 | P689Jun2014 | 1 | 1 | 1 |
| P34Jun2014 | 2 | 2 | 0.5* | P707Jun2014 | 1 | 1 | 1 |
| P36Jun2014 | 1 | 1.5 | 2 | P709Jun2014 | 0.5 | 1 | 0.5 |
| P63Jun2014 | 2 | 3 | 1 | ATCC 29213 | 0.5, 0.5, 1 | 1, 1, 2* | 0.5, 0.5, 0.5 |
| P64Jun2014 | 1 | 2 | 1 | P714Jun2014 | 0.5 | 1 | 1 |
| P65Jun2014 | 2 | 1.5 | 1 | P720Jun2014 | 1 | 2 | 0.5 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 1, 1, 1.5* | 0.5, 0.5, 0.5 | P724Jun2014 | 0.5 | 2* | 0.5 |
| P71Jun2014 | 1 | 1.5 | 0.5 | P729Jun2014 | 0.5 | 1 | 0.5 |
| P72Jun2014 | 1 | 3* | 0.5 | P736Jun2014 | 0.5 | 1 | 0.5 |
| P74Jun2014 | 1 | 2 | 1 | P741Jun2014 | 0.5 | 1 | 0.5 |
| P75Jun2014 | 1 | 2 | 1 | P747Jun2014 | 0.5 | 2 | 1 |
| P86Jun2014 | 1 | 0.75 | 0.5 | P771Jun2014 | 1 | 2 | 1 |
| P89Jun2014 | 2 | 1.5 | 1 | P773Jun2014 | 1 | 2 | 1 |
| P92Jun2014 | 1 | 1.5 | 0.5 | ATCC 29213 | 1, 0.5, 1 | 1, 0.5, 0.5 | 0.5, 0.5, 0.5 |
| P94Jun2014 | 1 | 1.5 | 0.5 | P779Jun2014 | 0.5 | 1 | 1 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 0.75, 1, 1.5* | 0.5, 1, 1 | P783Jun2014 | 1 | 2 | 1 |
| P99Jun2014 | 1 | 1 | 1 | P789Jun2014 | 2* | 2* | 0.5 |
| P102Jun2014 | 1 | 1 | 1 | P794Jun2014 | 1 | 2* | 0.5 |
| P103Jun2014 | 2 | 1.5 | 1 | P801Jun2014 | 1 | 2* | 0.5 |
| P118Jun2014 | 1 | 1.5 | 1 | P807Jun2014 | 1 | 1 | 1 |
| P126Jun2014 | 2 | 0.5 | 1 | P809Jun2014 | 1 | 1 | 1 |
| ATCC 29213 | 0.5, 0.5, 0.5 | 1, 1, 1.5* | 1, 1, 1 | P813Jun2014 | 0.5 | 1 | 0.5 |
| U175Jun2014 | 1 | 1 | 1 | P817Jun2014 | 0.5 | 1 | 0.5 |
| P131Jun2014 | 0.5 | 1 | 0.5 | ATCC 29213 | 0.5, 0.5, 0.5 | 1, 0.75, 0.5* | 0.5, 0.5, 1 |
| P148Jun2014 | 1 | 1.5 | 1 | P823Jun2014 | 2* | 1 | 0.5 |
| P149Jun2014 | 0.5 | 0.5 | 1 | P825Jun2014 | 1 | 1.5 | 1 |
| P154Jun2014 | 0.5 | 1.5* | 0.5 | P829Jun2014 | 0.5 | 1.5* | 0.5 |
| P159Jun2014 | 0.5 | 1.5* | 1 | P833Jun2014 | 1 | 1 | 1 |
| P178Jun2014 | 1 | 2 | 0.5 | P840Jun2014 | 1 | 2* | 0.5 |
| P184Jun2014 | 1 | 3* | 1 | P844Jun2014 | 1 | 2 | 1 |
| P192Jun2014 | 0.5 | 2* | 0.5 | P848Jun2014 | 2* | 1 | 0.5 |
| P197Jun2014 | 0.5 | 1.5* | 1 | P851Jun2014 | 1 | 1 | 1 |
| P202Jun2014 | 1 | 2 | 0.5 | P852Jun2014 | 1 | 2* | 0.5 |
All values are in µg/ml. MIC=Minimum inhibitory concentration
Summary of concordant (zero error and minor error) and nonconcordant (major error) readings of the in-house and commercial minimum inhibitory concentration strips against broth microdilution reference method
| In-house strip | Commercial strip | |||||
|---|---|---|---|---|---|---|
| Acceptability (%) | Outside±1log2 dilution (major error) | Acceptability (%) | Outside±1log2 dilution (major error) | |||
| Same reading as broth microdilution (zero error) | Within±1log2 dilution (minor acceptable error) | Same reading as broth microdilution (zero error) | Within±1log2 dilution (minor acceptable error) | |||
| Standardization and optimization stage (%) | ||||||
| ATCC 29213 | 17/30 | 13/30 | 0/30 | 2/30 | 12/30 | 16/30 |
| 30/30 (100) | 14/30 (46.67) | |||||
| Clinical isolates | 35/90 | 48/90 | 7/90 | 19/90 | 41/90 | 30/90 |
| 83/90 (92.2%) | 60/90 (66.67%) | |||||
| Validation stage (%) | ||||||
| ATCC 29213 | 20/30 | 10/30 | 0/30 | 15/30 | 12/30 | 3/30 |
| 30/30 (100) | 27/30 (90) | |||||
| Clinical isolates | 62/90 | 24/90 | 4/90 | 20/90 | 50/90 | 20/90 |
| 86/90 (95.5%) | 70/90 (77.78) | |||||
MIC=Minimum inhibitory concentration
Figure 5(a and b) Gross discrepancy among minimum inhibitory concentration values from the commercial strip (higher) against the in-house strip
Figure 6(a and b) When the impregnation technique was faulty, there were gross errors in the zones meeting on both sides