| Literature DB >> 31577800 |
Yuqing Li1, Elena E Giorgi2, Kenneth B Beckman3, Christian Caberto4, Remi Kazma5, Annette Lum-Jones4, Christopher A Haiman6, Loïc Le Marchand4, Daniel O Stram6, Richa Saxena7,8, Iona Cheng1.
Abstract
BACKGROUND: The mitochondrial genome encodes for thirty-seven proteins, among them thirteen are essential for the oxidative phosphorylation (OXPHOS) system. Inherited variation in mitochondrial genes may influence cancer development through changes in mitochondrial proteins, altering the OXPHOS process and promoting the production of reactive oxidative species.Entities:
Mesh:
Year: 2019 PMID: 31577800 PMCID: PMC6774509 DOI: 10.1371/journal.pone.0222284
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Study characteristics of 2,723 breast cancer cases and 3,260 controls in the MEC.
| Characteristics | Categories | Cases (n = 2,723) | Controls (n = 3,260) |
|---|---|---|---|
| Age | 66.10 (0.17) | 66.25 (0.16) | |
| Maternal race/ethncity, n(%) | African Americans | 463 (17.07%) | 923 (28.43%) |
| Asian Americans | 808 (29.78%) | 900 (27.73%) | |
| Latinos | 512 (18.87%) | 464 (14.29%) | |
| European Americans | 745 (27.46%) | 769 (23.69%) | |
| Native Hawaiians | 179 (6.6%) | 186 (5.73%) | |
| Age at Menarche | Younger than 13yrs | 1437 (53.62%) | 1590 (49.3%) |
| Age between 13~14yrs | 960 (35.82%) | 1267 (39.29%) | |
| Age over than 15yrs | 283 (10.56%) | 368 (11.41%) | |
| Age at first birth | Nulliparis | 408 (15.37%) | 379 (11.87%) |
| Younger than 20yrs | 608 (22.9%) | 873 (27.34%) | |
| Age between 21~30yrs | 1420 (53.48%) | 1698 (53.18%) | |
| Age over than 30yrs | 219 (8.25%) | 243 (7.61%) | |
| Age at menopause | Pre-menopausal | 162 (11.83%) | 203 (13.22%) |
| natural menopause at age <45 | 397 (29%) | 483 (31.45%) | |
| natural menopause at age 45–49 | 621 (45.36%) | 674 (43.88%) | |
| natural menopause at age 50–54 | 189 (13.81%) | 176 (11.46%) | |
| Parity | Nulliparous | 417 (15.42%) | 396 (12.2%) |
| 1 Child | 312 (11.54%) | 354 (10.91%) | |
| 2~3 children | 1244 (46.01%) | 1533 (47.23%) | |
| More than 4 children | 731 (27.03%) | 963 (29.67%) | |
| HRT use | Never used HRT | 1114 (41.8%) | 1505 (47.1%) |
| Ever used estrogen or progestin | 463 (17.37%) | 602 (18.84%) | |
| Current use estrogen or progestin | 1088 (40.83%) | 1088 (34.05%) | |
| BMI, n (%) | <25 kg/m2 | 946 (39.66%) | 1213 (42.35%) |
| > = 25 kg/m2 | 1439 (60.34%) | 1651 (57.65%) | |
| Family history of breast cancer, n (%) | Yes | 447 (16.042%) | 382 (11.72%) |
| Alcohol, g/day, mean (SD) | Yes | 5.58 (16.35) | 4.51 (14.55) |
| Smoking, pack/year, mean (SD) | Yes | 7.35 (12.69) | 6.85 (12.22) |
| History of Diabetes, n (%) | Yes | 317 (12.44%) | 319 (10.38%) |
| stage (%) | Localized | 1951 (72.15%) | -- |
| Advanced | 726 (26.78%) | -- | |
| HR status | Positive | 1953 (72.07%) | -- |
†Age of diagnosis for cases and age at blood draw for controls
††Due to missing value, the total doesn't add up to 100%.
‡Either estrogen Receptor (ER) or progesterone Receptor (PR) status is positive.
*Including regional and distant disease.
Association between mitochondrial genome, pathways, genes and breast cancer risk by maternal race/ethnicity and overall in the MEC.
| Maternal Race/Ethnicity | Mitochondrial genome | Mitochondrial Oxidative phosphoralation pathway | Mitochondrial complex | Mitochondrial gene | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | P value | q value | SNPs | P value | q value | Complex | SNPs | P value | q value | Gene | SNPs | No. SNPs with MAF> = 0.01 | P value | q value | |
| 290 | 0.752 | 0.902 | 208 | 0.743 | 0.968 | Complex I | 120 | 0.613 | 0.993 | 17 | 6 | 0.066 | 0.523 | ||
| 21 | 7 | 0.745 | 1.000 | ||||||||||||
| 8 | 5 | 0.863 | 1.000 | ||||||||||||
| 20 | 9 | 0.344 | 1.000 | ||||||||||||
| 4 | 2 | 0.608 | 1.000 | ||||||||||||
| 41 | 19 | 0.970 | 1.000 | ||||||||||||
| 9 | 4 | 0.703 | 1.000 | ||||||||||||
| Complex III | 37 | 0.545 | 0.993 | 37 | 14 | 0.545 | 1.000 | ||||||||
| Complex IV | 37 | 0.988 | 0.993 | 20 | 11 | 0.978 | 1.000 | ||||||||
| 5 | 5 | 1.000 | 1.000 | ||||||||||||
| 12 | 7 | 0.726 | 1.000 | ||||||||||||
| Complex V | 14 | 0.542 | 0.993 | 10 | 4 | 0.407 | 1.000 | ||||||||
| 4 | 1 | 0.791 | 1.000 | ||||||||||||
| 6 | 3 | 0.544 | 1.000 | ||||||||||||
| rRNA | 46 | 22 | 0.770 | 1.000 | |||||||||||
| tRNA | 30 | 10 | 0.751 | 1.000 | |||||||||||
| 193 | 0.972 | 0.972 | 146 | 0.923 | 0.968 | Complex I | 79 | 0.653 | 0.993 | 12 | 3 | 0.203 | 0.891 | ||
| 14 | 14 | 0.459 | 1.000 | ||||||||||||
| 5 | 3 | 0.235 | 0.891 | ||||||||||||
| 18 | 3 | 0.461 | 1.000 | ||||||||||||
| 2 | 1 | 0.843 | 1.000 | ||||||||||||
| 23 | 10 | 0.944 | 1.000 | ||||||||||||
| 5 | 2 | 0.904 | 1.000 | ||||||||||||
| Complex III | 31 | 0.974 | 0.993 | 31 | 13 | 0.954 | 1.000 | ||||||||
| Complex IV | 22 | 0.993 | 0.993 | 9 | 2 | 0.980 | 1.000 | ||||||||
| 4 | 2 | 0.882 | 1.000 | ||||||||||||
| 9 | 4 | 0.599 | 1.000 | ||||||||||||
| Complex V | 14 | 0.320 | 0.993 | 11 | 5 | 0.272 | 0.891 | ||||||||
| 3 | 1 | 0.974 | 1.000 | ||||||||||||
| MT-DLOOP | 5 | 2 | 0.968 | 1.000 | |||||||||||
| rRNA | 24 | 13 | 0.945 | 1.000 | |||||||||||
| tRNA | 18 | 3 | 0.888 | 1.000 | |||||||||||
| 248 | 0.384 | 0.816 | 185 | 0.457 | 0.968 | Complex I | 107 | 0.489 | 0.993 | 15 | 4 | 0.758 | 1.000 | ||
| 16 | 6 | 0.336 | 1.000 | ||||||||||||
| 7 | 3 | 0.756 | 1.000 | ||||||||||||
| 20 | 7 | 0.257 | 0.891 | ||||||||||||
| 4 | 0 | 0.080 | 0.585 | ||||||||||||
| 36 | 6 | 0.588 | 1.000 | ||||||||||||
| 9 | 3 | 0.846 | 1.000 | ||||||||||||
| Complex III | 32 | 0.690 | 0.993 | 32 | 5 | 0.684 | 1.000 | ||||||||
| Complex IV | 32 | 0.413 | 0.993 | 17 | 4 | 0.447 | 1.000 | ||||||||
| 5 | 1 | 0.204 | 0.891 | ||||||||||||
| 10 | 3 | 0.562 | 1.000 | ||||||||||||
| Complex V | 14 | 0.170 | 0.714 | 9 | 2 | 0.155 | 0.775 | ||||||||
| 5 | 1 | 0.239 | 0.891 | ||||||||||||
| MT-DLOOP | 5 | 2 | 0.855 | 1.000 | |||||||||||
| rRNA | 41 | 11 | 0.112 | 0.709 | |||||||||||
| tRNA | 17 | 2 | 0.917 | 1.000 | |||||||||||
| 189 | 0.015 | 0.252 | Complex I | 105 | 0.022 | 0.420 | 14 | 3 | 0.605 | 1.000 | |||||
| 7 | 2 | 0.042 | 0.496 | ||||||||||||
| 18 | 8 | 0.349 | 1.000 | ||||||||||||
| 3 | 1 | 0.222 | 0.891 | ||||||||||||
| 36 | 8 | 0.031 | 0.496 | ||||||||||||
| 10 | 1 | 0.036 | 0.496 | ||||||||||||
| Complex III | 35 | 0.047 | 0.494 | 35 | 9 | 0.047 | 0.496 | ||||||||
| Complex IV | 34 | 0.030 | 0.420 | 18 | 2 | 0.297 | 0.941 | ||||||||
| 11 | 3 | 0.363 | 1.000 | ||||||||||||
| Complex V | 15 | 0.069 | 0.580 | 13 | 2 | 0.137 | 0.766 | ||||||||
| 2 | 0 | 0.011 | 0.348 | ||||||||||||
| MT-DLOOP | 6 | 3 | 0.259 | 0.891 | |||||||||||
| rRNA | 44 | 11 | 0.154 | 0.775 | |||||||||||
| tRNA | 22 | 8 | 0.021 | 0.496 | |||||||||||
| 75 | 0.544 | 0.816 | 57 | 0.785 | 0.968 | Complex I | 32 | 0.859 | 0.993 | 4 | 1 | 0.563 | 1.000 | ||
| 6 | 2 | 0.588 | 1.000 | ||||||||||||
| 4 | 1 | 0.768 | 1.000 | ||||||||||||
| 6 | 0 | 0.520 | 1.000 | ||||||||||||
| 11 | 1 | 1.000 | 1.000 | ||||||||||||
| 1 | 0 | 0.058 | 0.501 | ||||||||||||
| Complex III | 10 | 0.504 | 0.993 | 10 | 1 | 0.510 | 1.000 | ||||||||
| Complex IV | 10 | 0.905 | 0.993 | 5 | 2 | 0.709 | 1.000 | ||||||||
| MT-CO2 | 2 | 0 | 0.858 | 1.000 | |||||||||||
| 3 | 0 | 0.638 | 1.000 | ||||||||||||
| Complex V | 5 | 0.492 | 0.993 | 4 | 1 | 0.725 | 1.000 | ||||||||
| 1 | 0 | 0.058 | 0.501 | ||||||||||||
| MT-DLOOP | 1 | 0 | 0.648 | 1.000 | |||||||||||
| rRNA | 10 | 3 | 0.102 | 0.692 | |||||||||||
| tRNA | 7 | 1 | 0.459 | 1.000 | |||||||||||
| 314 | 0.525 | 0.816 | 227 | 0.537 | 0.968 | Complex I | 127 | 0.380 | 0.993 | 17 | 10 | 0.590 | 1.000 | ||
| 22 | 19 | 0.039 | 0.496 | ||||||||||||
| 9 | 8 | 0.270 | 0.891 | ||||||||||||
| 23 | 16 | 0.515 | 1.000 | ||||||||||||
| 4 | 4 | 0.765 | 1.000 | ||||||||||||
| 43 | 27 | 0.741 | 1.000 | ||||||||||||
| 9 | 8 | 0.576 | 1.000 | ||||||||||||
| Complex III | 44 | 0.821 | 0.993 | 44 | 25 | 0.821 | 1.000 | ||||||||
| Complex IV | 38 | 0.434 | 0.993 | 20 | 15 | 0.636 | 1.000 | ||||||||
| 5 | 5 | 0.245 | 0.891 | ||||||||||||
| 13 | 9 | 0.465 | 1.000 | ||||||||||||
| Complex V | 18 | 0.797 | 0.993 | 15 | 9 | 0.766 | 1.000 | ||||||||
| 3 | 2 | 0.595 | 1.000 | ||||||||||||
| MT-DLOOP | 6 | 4 | 0.788 | 1.000 | |||||||||||
| rRNA | 52 | 38 | 0.715 | 1.000 | |||||||||||
| tRNA | 29 | 13 | 0.136 | 0.766 | |||||||||||
*Pathway and gene-based analysis were adjusted for age, sex, maternal race/ethnicity (all groups combined), and genetic ancestry.
# Treshold of MAF to differenciate common and rare mtSNPs 0.1%
Fig 1Mitochondrial solar plot for European Americans.
The three white circles from the outer to inner circles correspond to the P value of 10−3, 10−2 and 10−1. The teal circle represents a p-value of 0.05. Each dot represents the mtSNP association with breast cancer color coded by mitochondrial gene.