| Literature DB >> 31575033 |
Bruce Englefield1, Steven G Candy2, Melissa Starling3, Paul D McGreevy3.
Abstract
Adjustment for spatial and temporal trends using a Generalised Additive Model with Poisson error also failed to detect a significant VF effect. A simulation study used to estimate the power to detect a statistically significant reduction in roadkill rate gave, for median estimates of reduction of 21%, 48%, and 57%, estimates of power of 0.24, 0.78, and 0.91, respectively. Therefore, this study failed to confirm previously reported estimates of reduction in roadkill rates claimed for this VF of 50%-90%, despite having adequate power to do so. However, point estimates obtained for these three species of reductions ranging from 13% to 32% leave open the question of there being a real but modest effect that was below statistical detection limits.Entities:
Keywords: One Welfare; animal welfare; avoidance learning; roadkill; virtual fence; wildlife vehicle collisions
Year: 2019 PMID: 31575033 PMCID: PMC6827006 DOI: 10.3390/ani9100752
Source DB: PubMed Journal: Animals (Basel) ISSN: 2076-2615 Impact factor: 2.752
Periods with On-Off Periods 3 and 5 disaggregated to On and Off Blocks excluding buffer sections 1 and 8 (Block 1: Sections 2, 4 and 6; Block 2: Sections 3, 5 and 7). The periods when the virtual fence (VF) was switched on are italicised.
| Period Label | Pre-trial | Pre_All_Off | Block1_On | Post1_All_Off | Block2_On | Post2_All_Off |
|---|---|---|---|---|---|---|
| Period No | 1 | 2 |
| 4 |
| 6 |
| Start Date 2018 | 26/03 | 1/05 |
| 25/06 |
| 6/08 |
| End Date 2018 | 8/04 | 28/05 |
| 9/07 |
| 20/08 |
| Period (days) | 14 | 28 |
| 14 |
| 14 |
Roadkill rates for three most prevalent roadkill species. Number killed for VF “On” versus “Off” and standardised rates using a general VF “On” vs “Off” factor/contrast estimated using all periods and Sections 2 to 7. Raw standardised rates and resultant percentage reduction based on total counts appear in the second, third, and fourth columns followed by model-based standardised rates and resultant percentage reductions with corresponding standard errors. For raw rates, the standardisation used total days of VF “On” apportioned by the fraction of sections switched on in Periods 3 and 5 and similarly for VF “Off”. Vehicle counts were similarly apportioned.
| Species | Total Counts | Rate (number.month−1km−1) | Rate (number.100kVeh−1km−1) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| VF Off | VF On | Total | VF Off | VF On | %Reduction | VF Off | VF On | %Reduction | |
| Wallaby (BW) | 58 | 10 | 68 | 3.946 | 2.381 | 39.66 | 4.986 | 2.612 | 47.60 |
| Pademelon (TP) | 48 | 10 | 58 | 3.265 | 2.381 | 27.08 | 4.126 | 2.612 | 36.69 |
| Possum (BP) | 23 | 5 | 28 | 1.565 | 1.190 | 23.91 | 1.977 | 1.306 | 33.93 |
| Rates from LM estimates (SE) for general VF_On_vs_Off factor | |||||||||
| Wallaby (BW) | 3.194 (0.490) | 2.381 (0.980) | 25.5 (39.3) | 3.951 (0.649) | 25.5 (39.3) | 33.1 (41.7) | |||
| Pademelon (TP) | 3.492 (0.411) | 2.381 (0.823) | 31.8 (29.9) | 4.614 (0.595) | 31.8 (29.9) | 42.2 (32.4) | |||
| Possum (BP) | 1.389 (0.367) | 1.190 (0.734) | 14.3 (68.6) | 1.818 (0.483) | 14.3 (68.6) | 27.3 (67.9) | |||
| Rates from GAM estimates (SE) for general VF_On_vs_Off factor | |||||||||
| Wallaby (BW) | 23.0 (27.7) | 31.3 (24.7) | |||||||
| Pademelon (TP) | 32.2 (23.9) | 29.4 (26.0) | |||||||
| Possum (BP) | 12.5 (45.5) | 21.5 (40.8) | |||||||
Roadkill rates for three most prevalent roadkill species. Linear model contrast parameter estimates for standardised roadkill rates (number.month−1km−1).
| Crossover Contrast a (Periods 3 and 5) | ||||||
|---|---|---|---|---|---|---|
| Block 1 | Block 2 | LMM/LM Estimate | ||||
| Species | Estimate | SE | Estimate | SE | Estimate | SE |
| Wallaby (BW) | −2.381 | 1.615 | −0.952 | 1.615 | −1.667 | 1.080 |
| Pademelon (TP) | −1.429 | 1.782 | 0.476 | 1.782 | −0.476 | 1.230 |
| Possum (BP) | 0.476 | 1.166 | −1.905 | 1.166 | −0.714 | 0.673 |
| MBACI contrast 1 b (Impact: Before vs After) (all periods except 6) | ||||||
| Wallaby (BW) | −1.905 | 1.495 | −0.952 | 1.495 | −1.429 | 1.057 |
| Pademelon (TP) | −0.794 | 1.611 | 0.476 | 1.611 | −0.159 | 1.139 |
| Possum (BP) | 0.635 | 1.365 | 0.476 | 1.365 | 0.556 | 0.966 |
| MBACI contrast 2 c (Control: Before vs After) (all periods except 6) | ||||||
| Wallaby (BW) | −3.175 ** | 1.495 | 2.381 | 1.495 | −0.397 | 1.057 |
| Pademelon (TP) | −0.952 | 1.611 | −0.952 | 1.611 | −0.952 | 1.139 |
| Possum (BP) | 0.159 | 1.365 | 0.317 | 1.365 | 0.317 | 0.966 |
| On vs Off contrast a (all periods) | ||||||
| Wallaby (BW) | −0.833 | 1.575 | −0.794 | 1.575 | −0.813 | 1.095 |
| Pademelon (TP) | −1.508 | 1.271 | −0.714 | 1.271 | −1.111 | 0.920 |
| Possum (BP) | 0.516 | 1.047 | −0.913 | 1.047 | −0.198 | 0.821 |
a A negative estimate indicates a reduction in standardised roadkill when the fence was switched on. b A negative estimate indicates a reduction in standardised roadkill when the fence was switched on. Values within brackets are the Impact values after subtracting the corresponding Control estimates. c A negative estimate indicates a reduction in standardised roadkill when the fence for the control comparison for the sections of the block switched off both before and during the periods corresponding to the On block. If no probability level is given then p > 0.1. ** Probability level 0.025–0.05.
Figure 1Standardised roadkill (month−1km−1) for Bennett’s wallaby for Periods 3 and 5 for Crossover means by Block. Single Standard Error (SE) bars are shown.
Figure 2Standardised roadkill rate (month−1km−1) for Bennett’s wallaby for Periods 2 to 5 for MBACI means by Block. Single SE bars are shown.
Power calculation using 1000 simulations for each artificial inflation/deflation level of the VF Off/On Bennett’s wallaby counts. Simulations used Poisson random draws for each of the 30 combinations of Period by Section using Poisson means calculated as predicted means from the GAM fitted to the original data with an additional Gaussian random prediction error added on the linear predictor scale.
| “On” Deflation | Median a | Standard b | Median Standard c | Power d to Detect |
|---|---|---|---|---|
| 0 | 20.96 | 34.32 | 27.87 | 0.242 |
| 10 | 36.69 | 28.75 | 23.25 | 0.543 |
| 20 | 48.08 | 22.60 | 19.69 | 0.783 |
| 30 | 57.32 | 20.38 | 16.94 | 0.907 |
a Median of 1000 simulations and GAM estimate of VF_On_vs_Off factor On effect (Par_est), with percentage reduction due to the VF switched on, given by 100*{1-exp(Par_est)}. The GAM also included cubic smoothing splines as fitted to the original data. b Standard deviation of the 1000 simulation estimates of percentage reduction. c Median of 1000 simulation estimates of the standard error of the percentage reduction given by 100*exp(Par_est)*SE_Par_est, where SE_Par_est is the standard error of the estimate (Par_est). d 1-Probability of a Type II error, where a Type II error is accepting the null hypothesis that the percentage reduction is zero when it is false as given by the alternative hypothesis that the true percentage reduction is given by the median percentage reduction. Note that the critical value of the null hypothesis test was the difference between the 95% quantile of the 1000 estimates of percentage reduction minus the median of these 1000 estimates.